RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	PLAC8	Q9NZF1	115 aa		0.37	□□□□□ -2.35
PRKDC-210	ENST00000541488	LAMTOR3	Q9UHA4	124 aa		0.37	□□□□□ -2.35
PRKDC-210	ENST00000541488	BOK	Q9UMX3	212 aa	Predicted RBP	0.37	□□□□□ -2.35
PRKDC-210	ENST00000541488	RNF11	Q9Y3C5	154 aa		0.37	□□□□□ -2.35
PRKDC-210	ENST00000541488		A0A087WTM6	91 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	GPR31	O00270	319 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	RER1	O15258	196 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	PPY	P01298	95 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	CXCL1	P09341	107 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	PIRT	P0C851	137 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	PPP1R2	P41236	205 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	FOXA3	P55318	350 aa	Predicted RBP	0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	BLCAP	P62952	87 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	CCL8	P80075	99 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	BASP1	P80723	227 aa	Known RBP	0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	SPINK9	Q5DT21	86 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	TMEM14EP	Q6UXP3	125 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	LINC00299	Q6ZSB3	139 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	NAT14	Q8WUY8	206 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	C10orf82	Q8WW14	230 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	AP3S1	Q92572	193 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	PLEKHB2	Q96CS7	222 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	OR2H1	Q9GZK4	316 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	PROK2	Q9HC23	129 aa		0.36	□□□□□ -2.35
PRKDC-210	ENST00000541488	CST7	O76096	145 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	IGHV3-33	P01772	117 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	TFF1	P04155	84 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	RPL35	P42766	123 aa	Known RBP	0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	GNG3	P63215	75 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	SNCB	Q16143	134 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	KRTAP20-2	Q3LI61	65 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	SCIMP	Q6UWF3	145 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	COX6B2	Q6YFQ2	88 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	CROCCP2	Q86T23	111 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	TAC4	Q86UU9	113 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	ATOH7	Q8N100	152 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	LCN9	Q8WX39	176 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	COX14	Q96I36	57 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	MCEE	Q96PE7	176 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	SELENOS	Q9BQE4	189 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	ASB4	Q9Y574	426 aa		0.35	□□□□□ -2.35
PRKDC-210	ENST00000541488	DEFB131B	A0A096LNP1	70 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488		A0A096LPI6	279 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488		K7ERJ3	54 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	MFSD11	O43934	449 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	IDO1	P14902	403 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	HBB	P68871	147 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	RBM3	P98179	157 aa	Known RBP	0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	RTL8B	Q17RB0	113 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	ASB16-AS1	Q495Z4	193 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	GLIPR1L1	Q6UWM5	242 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	VMO1	Q7Z5L0	202 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	ANGPTL5	Q86XS5	388 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	KRTAP8-1	Q8IUC2	63 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	FAM216B	Q8N7L0	139 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	NEK7	Q8TDX7	302 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	CST11	Q9H112	138 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	NIT2	Q9NQR4	276 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	BIN3	Q9NQY0	253 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	SS18L2	Q9UHA2	77 aa		0.34	□□□□□ -2.36
PRKDC-210	ENST00000541488	TRAV23DV6	A0A075B6W5	121 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488	C9orf170	A2RU37	121 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488		H3BQV1	296 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488	NPFF	O15130	113 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488	CSN2	P05814	226 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488	FXYD6P3	P58550	94 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488	BTG2	P78543	158 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488	MSMO1	Q15800	293 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488	DSPP	Q9NZW4	1301 aa		0.33	□□□□□ -2.36
PRKDC-210	ENST00000541488		A0A0J9YY99	117 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	TRBV30	A0A0K0K1B3	111 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	ODAM	A1E959	279 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	HTN3	P15516	51 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	TAS2R41	P59536	307 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	MRPS36	P82909	103 aa	Known RBP	0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	MIR22HG	Q0VDD5	57 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	KRTAP21-1	Q3LI58	79 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	FOXI2	Q6ZQN5	318 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	PRR15	Q8IV56	129 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	STX19	Q8N4C7	294 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	SMIM20	Q8N5G0	67 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	OR4C12	Q96R67	309 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	EFCAB11	Q9BUY7	163 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488	NUBP2	Q9Y5Y2	271 aa		0.32	□□□□□ -2.36
PRKDC-210	ENST00000541488		A0A0D9SFI3	127 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488		A0A0D9SG42	100 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488		E5RI56	91 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	PPP5D1	E7EU14	171 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488		H0YGG7	62 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	KPNA4	O00629	521 aa	Predicted RBP	0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	PFDN1	O60925	122 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	CD14	P08571	375 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	DIAPH2-AS1	Q14236	149 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	LTC4S	Q16873	150 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	OCIAD2	Q56VL3	154 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488		Q6ZQY7	126 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	LINC00269	Q8N2A0	174 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	FAM24B	Q8N5W8	94 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	OR4B1	Q8NGF8	309 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	GRPEL2	Q8TAA5	225 aa		0.31	□□□□□ -2.36

Retrieved 100 of 20,778 RNA–protein pairs in 80 ms