RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 TMEM136Q6ZRR5 245 aa11.92□□□□□ -0.5
SNRPA1-203ENST00000540017 SMIM2Q9BVW6 85 aa11.92□□□□□ -0.5
SNRPA1-203ENST00000540017 ORMDL3Q8N138 153 aa11.91□□□□□ -0.5
SNRPA1-203ENST00000540017 Q8N1X5 172 aa11.91□□□□□ -0.5
SNRPA1-203ENST00000540017 OR5A1Q8NGJ0 315 aa11.91□□□□□ -0.5
SNRPA1-203ENST00000540017 TMEM101Q96IK0 257 aa11.91□□□□□ -0.5
SNRPA1-203ENST00000540017 PRELID3AQ96N28 172 aa11.91□□□□□ -0.5
SNRPA1-203ENST00000540017 IMMP2LQ96T52 175 aa11.91□□□□□ -0.5
SNRPA1-203ENST00000540017 CTDSP1Q9GZU7 261 aa11.91□□□□□ -0.5
SNRPA1-203ENST00000540017 CDC42SE2Q9NRR3 84 aa11.91□□□□□ -0.5
SNRPA1-203ENST00000540017 GAGE12HA6NDE8 117 aa11.9□□□□□ -0.5
SNRPA1-203ENST00000540017 PHOX2AO14813 284 aa11.9□□□□□ -0.5
SNRPA1-203ENST00000540017 CHCHD10Q8WYQ3 142 aaPredicted RBP11.9□□□□□ -0.5
SNRPA1-203ENST00000540017 UBE2D4Q9Y2X8 147 aa11.9□□□□□ -0.5
SNRPA1-203ENST00000540017 CARHSP1Q9Y2V2 147 aaKnown RBP11.89□□□□□ -0.51
SNRPA1-203ENST00000540017 LINC00959A0A1B0GUT2 108 aa11.88□□□□□ -0.51
SNRPA1-203ENST00000540017 TCAPO15273 167 aa11.88□□□□□ -0.51
SNRPA1-203ENST00000540017 Q6ZSA8 131 aa11.88□□□□□ -0.51
SNRPA1-203ENST00000540017 ZNF664Q8N3J9 261 aa11.88□□□□□ -0.51
SNRPA1-203ENST00000540017 FAT1Q14517 4588 aa11.87□□□□□ -0.51
SNRPA1-203ENST00000540017 RPL39P62891 51 aaKnown RBP11.87□□□□□ -0.51
SNRPA1-203ENST00000540017 PRSS47A8MTI9 375 aa11.86□□□□□ -0.51
SNRPA1-203ENST00000540017 RNASE13Q5GAN3 156 aaKnown RBP11.86□□□□□ -0.51
SNRPA1-203ENST00000540017 C15orf56Q8N910 161 aa11.86□□□□□ -0.51
SNRPA1-203ENST00000540017 CLRN3Q8NCR9 226 aa11.86□□□□□ -0.51
SNRPA1-203ENST00000540017 FAM104AQ969W3 186 aa11.86□□□□□ -0.51
SNRPA1-203ENST00000540017 CSDC2Q9Y534 153 aaKnown RBP11.86□□□□□ -0.51
SNRPA1-203ENST00000540017 FOXI1Q12951 378 aa11.85□□□□□ -0.51
SNRPA1-203ENST00000540017 DGAT2L7PQ6IED9 249 aa11.85□□□□□ -0.51
SNRPA1-203ENST00000540017 TRAV9-1A0A075B6T8 112 aa11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 LOC389332A0A1B0GUA5 103 aa11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 CCL25O15444 150 aa11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 SMR3BP02814 79 aaPredicted RBP11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 SLPIP03973 132 aa11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 XCL1P47992 114 aa11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 Q6ZUT4 128 aa11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 TIMM21Q9BVV7 248 aa11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 LAMTOR2Q9Y2Q5 125 aa11.84□□□□□ -0.51
SNRPA1-203ENST00000540017 hDV102S1A0JD36 115 aa11.83□□□□□ -0.52
SNRPA1-203ENST00000540017 TMEM18Q96B42 140 aa11.83□□□□□ -0.52
SNRPA1-203ENST00000540017 RPS10P5Q9NQ39 176 aa11.83□□□□□ -0.52
SNRPA1-203ENST00000540017 RHEBQ15382 184 aa11.82□□□□□ -0.52
SNRPA1-203ENST00000540017 KIAA1644Q3SXP7 199 aa11.82□□□□□ -0.52
SNRPA1-203ENST00000540017 C9orf163Q8N9P6 203 aa11.82□□□□□ -0.52
SNRPA1-203ENST00000540017 OPRPNQ99935 248 aaPredicted RBP11.82□□□□□ -0.52
SNRPA1-203ENST00000540017 MAP1LC3AQ9H492 121 aa11.82□□□□□ -0.52
SNRPA1-203ENST00000540017 RAB5AP20339 215 aa11.81□□□□□ -0.52
SNRPA1-203ENST00000540017 S100PP25815 95 aa11.81□□□□□ -0.52
SNRPA1-203ENST00000540017 CNBPP62633 177 aaKnown RBP11.81□□□□□ -0.52
SNRPA1-203ENST00000540017 SMAGPQ0VAQ4 97 aa11.81□□□□□ -0.52
SNRPA1-203ENST00000540017 SS18Q15532 418 aa11.81□□□□□ -0.52
SNRPA1-203ENST00000540017 HIGD2BQ4VC39 106 aa11.81□□□□□ -0.52
SNRPA1-203ENST00000540017 Q8N8P6 123 aa11.8□□□□□ -0.52
SNRPA1-203ENST00000540017 TRAV13-1A0A0B4J241 112 aa11.79□□□□□ -0.52
SNRPA1-203ENST00000540017 APOC3P02656 99 aa11.79□□□□□ -0.52
SNRPA1-203ENST00000540017 CFAP161Q6P656 301 aa11.79□□□□□ -0.52
SNRPA1-203ENST00000540017 CD164L2Q6UWJ8 174 aa11.79□□□□□ -0.52
SNRPA1-203ENST00000540017 SCXQ7RTU7 201 aa11.79□□□□□ -0.52
SNRPA1-203ENST00000540017 SPANXA1Q9NS26 97 aa11.79□□□□□ -0.52
SNRPA1-203ENST00000540017 EPM2AB3EWF7 344 aa11.78□□□□□ -0.52
SNRPA1-203ENST00000540017 SDIM1Q6ZPB5 146 aa11.78□□□□□ -0.52
SNRPA1-203ENST00000540017 GNB1LQ9BYB4 327 aa11.78□□□□□ -0.52
SNRPA1-203ENST00000540017 C1orf196B1AJZ1 125 aa11.77□□□□□ -0.53
SNRPA1-203ENST00000540017 MRPS36P82909 103 aaKnown RBP11.77□□□□□ -0.53
SNRPA1-203ENST00000540017 Q5VSD8 79 aa11.77□□□□□ -0.53
SNRPA1-203ENST00000540017 CHAC1Q9BUX1 264 aa11.77□□□□□ -0.53
SNRPA1-203ENST00000540017 AP5S1Q9NUS5 200 aa11.77□□□□□ -0.53
SNRPA1-203ENST00000540017 GVQW2A0A096LPI5 108 aaPredicted RBP11.76□□□□□ -0.53
SNRPA1-203ENST00000540017 PANO1I0J062 215 aa11.76□□□□□ -0.53
SNRPA1-203ENST00000540017 IFI27P40305 119 aaPredicted RBP11.76□□□□□ -0.53
SNRPA1-203ENST00000540017 CIRBP-AS1Q8TBR5 109 aa11.75□□□□□ -0.53
SNRPA1-203ENST00000540017 LINC00526Q96FQ7 95 aa11.75□□□□□ -0.53
SNRPA1-203ENST00000540017 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.75□□□□□ -0.53
SNRPA1-203ENST00000540017 VPS13BQ7Z7G8 4022 aa11.75□□□□□ -0.53
SNRPA1-203ENST00000540017 TGIF2-C20orf24A0A0A6YYL0 155 aa11.74□□□□□ -0.53
SNRPA1-203ENST00000540017 NXT2Q9NPJ8 142 aaKnown RBP11.74□□□□□ -0.53
SNRPA1-203ENST00000540017 PYGO1Q9Y3Y4 419 aa11.74□□□□□ -0.53
SNRPA1-203ENST00000540017 IGLV4-3A0A075B6K6 122 aa11.73□□□□□ -0.53
SNRPA1-203ENST00000540017 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.73□□□□□ -0.53
SNRPA1-203ENST00000540017 IGHV1-58A0A0C4DH39 117 aa11.73□□□□□ -0.53
SNRPA1-203ENST00000540017 C2orf66Q6UXQ4 117 aa11.73□□□□□ -0.53
SNRPA1-203ENST00000540017 ALKBH7Q9BT30 221 aaPredicted RBP11.73□□□□□ -0.53
SNRPA1-203ENST00000540017 COX7A2LO14548 114 aa11.72□□□□□ -0.53
SNRPA1-203ENST00000540017 SNAPINO95295 136 aa11.72□□□□□ -0.53
SNRPA1-203ENST00000540017 NDUFA5Q16718 116 aa11.72□□□□□ -0.53
SNRPA1-203ENST00000540017 ORMDL2Q53FV1 153 aa11.72□□□□□ -0.53
SNRPA1-203ENST00000540017 C5orf38Q86SI9 138 aa11.72□□□□□ -0.53
SNRPA1-203ENST00000540017 SVBPQ8N300 66 aa11.72□□□□□ -0.53
SNRPA1-203ENST00000540017 MRPL18Q9H0U6 180 aaKnown RBP11.72□□□□□ -0.53
SNRPA1-203ENST00000540017 IGHV3-64A0A075B6Q5 118 aa11.71□□□□□ -0.53
SNRPA1-203ENST00000540017 IFITM10A6NMD0 228 aa11.71□□□□□ -0.53
SNRPA1-203ENST00000540017 K7EMI3 77 aa11.71□□□□□ -0.53
SNRPA1-203ENST00000540017 COX19Q49B96 90 aa11.71□□□□□ -0.53
SNRPA1-203ENST00000540017 CYSLTR1Q9Y271 337 aa11.71□□□□□ -0.53
SNRPA1-203ENST00000540017 FAM229AH3BQW9 127 aa11.7□□□□□ -0.54
SNRPA1-203ENST00000540017 MT-ND6P03923 174 aa11.7□□□□□ -0.54
SNRPA1-203ENST00000540017 FABP9Q0Z7S8 132 aa11.7□□□□□ -0.54
SNRPA1-203ENST00000540017 ZC2HC1BQ5TFG8 222 aa11.7□□□□□ -0.54
SNRPA1-203ENST00000540017 IGHV3OR16-9A0A0B4J2B5 98 aa11.69□□□□□ -0.54
SNRPA1-203ENST00000540017 IGIPA6NJ69 53 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms