RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 WNK2Q9Y3S1 2297 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 PRG4Q92954 1404 aaPredicted RBP0.36□□□□□ -2.35
CD44-238ENST00000534296 PARP14Q460N5 1801 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 UNC13BO14795 1591 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 DIP2BQ9P265 1576 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 CEP170BQ9Y4F5 1589 aaPredicted RBP0.36□□□□□ -2.35
CD44-238ENST00000534296 ABCA3Q99758 1704 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 PLCE1Q9P212 2302 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 CXorf51AA0A1B0GTR3 108 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 TFF1P04155 84 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 SMIM6P0DI80 62 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 SSBP1Q04837 148 aaKnown RBP0.35□□□□□ -2.35
CD44-238ENST00000534296 SLC48A1Q6P1K1 146 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 C4orf33Q8N1A6 199 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 FAM213BQ8TBF2 198 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 FOCADQ5VW36 1801 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 SYNE1Q8NF91 8797 aaKnown RBP0.35□□□□□ -2.35
CD44-238ENST00000534296 TJP1Q07157 1748 aa0.35□□□□□ -2.35
CD44-238ENST00000534296 CPS1P31327 1500 aa0.34□□□□□ -2.35
CD44-238ENST00000534296 PLECQ15149 4684 aaKnown RBP0.34□□□□□ -2.35
CD44-238ENST00000534296 A0A096LNT2 108 aa0.34□□□□□ -2.36
CD44-238ENST00000534296 M0R2P5 195 aa0.34□□□□□ -2.36
CD44-238ENST00000534296 COX6A2Q02221 97 aa0.34□□□□□ -2.36
CD44-238ENST00000534296 SPCS2Q15005 226 aa0.34□□□□□ -2.36
CD44-238ENST00000534296 SPANXN1Q5VSR9 72 aa0.34□□□□□ -2.36
CD44-238ENST00000534296 IFI27L1Q96BM0 104 aa0.34□□□□□ -2.36
CD44-238ENST00000534296 SMIM3Q9BZL3 60 aa0.34□□□□□ -2.36
CD44-238ENST00000534296 SIPA1L3O60292 1781 aaPredicted RBP0.34□□□□□ -2.36
CD44-238ENST00000534296 ARFGEF1Q9Y6D6 1849 aa0.34□□□□□ -2.36
CD44-238ENST00000534296 ANK3Q12955 4377 aaKnown RBP0.34□□□□□ -2.36
CD44-238ENST00000534296 PKHD1L1Q86WI1 4243 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 DCAF1Q9Y4B6 1507 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 LYSTQ99698 3801 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 CACNA1CQ13936 2221 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 MYH7P12883 1935 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 OVOS2A0A0J9YW53 1432 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 OVOS2Q6IE36 1432 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 C10orf71Q711Q0 1435 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 TRBV20-1A0A075B6N2 111 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 K7ERU9 68 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 TSPAN19P0C672 248 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 ELOF1P60002 83 aaKnown RBP0.33□□□□□ -2.36
CD44-238ENST00000534296 CKS1BP61024 79 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 KRTAP19-6Q3LI70 58 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 RPRMQ9NS64 109 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 TMEM242Q9NWH2 141 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 V9GYV3 84 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 FAT2Q9NYQ8 4349 aa0.33□□□□□ -2.36
CD44-238ENST00000534296 APOBP04114 4563 aaKnown RBP0.33□□□□□ -2.36
CD44-238ENST00000534296 TNS1Q9HBL0 1735 aaKnown RBP0.33□□□□□ -2.36
CD44-238ENST00000534296 TRRAPQ9Y4A5 3859 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 DISP2A7MBM2 1401 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 FHAD1B1AJZ9 1412 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 FAT1Q14517 4588 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 TRBV7-1A0A0A6YYK4 115 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 PITX3O75364 302 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 IFNA17P01571 189 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 PIPP12273 146 aaPredicted RBP0.32□□□□□ -2.36
CD44-238ENST00000534296 ASIPP42127 132 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 OR2T2Q6IF00 324 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 VSTM2AQ8TAG5 236 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 SMIM11BQ8TCY0 68 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 PROK2Q9HC23 129 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 COPZ2Q9P299 210 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 LSM2Q9Y333 95 aaKnown RBP0.32□□□□□ -2.36
CD44-238ENST00000534296 MAGI2Q86UL8 1455 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 ZC3H13Q5T200 1668 aaKnown RBP0.32□□□□□ -2.36
CD44-238ENST00000534296 NRXN2Q9P2S2 1712 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 DNAH5Q8TE73 4624 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 SSC5DA1L4H1 1573 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 ADAMTS12P58397 1594 aa0.32□□□□□ -2.36
CD44-238ENST00000534296 DOCK11Q5JSL3 2073 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 GAPVD1Q14C86 1478 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 TRAV12-3A0A0B4J271 114 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 PIGBOS1A0A0B4J2F0 54 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 SNCGO76070 127 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 RRAS2P62070 204 aaPredicted RBP0.31□□□□□ -2.36
CD44-238ENST00000534296 HIST1H1AQ02539 215 aaPredicted RBP0.31□□□□□ -2.36
CD44-238ENST00000534296 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 C20orf197Q8N268 126 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 COX7B2Q8TF08 81 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 MAFIPQ8WZ33 124 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 TNCP24821 2201 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 PAPPA2Q9BXP8 1791 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 SMARCA2P51531 1590 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 LRRC37A3O60309 1634 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 SHROOM2Q13796 1616 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 PREX2Q70Z35 1606 aa0.31□□□□□ -2.36
CD44-238ENST00000534296 AKAP6Q13023 2319 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 PIRTP0C851 137 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 IGLC6P0CF74 106 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 ACYP2P14621 99 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 EMX2Q04743 252 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 Q5BKY6 102 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 TSTD1Q8NFU3 115 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 NDUFA12Q9UI09 145 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 RNF17Q9BXT8 1623 aaKnown RBP0.3□□□□□ -2.36
CD44-238ENST00000534296 DNAH10Q8IVF4 4471 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 PPIP5K1Q6PFW1 1433 aa0.3□□□□□ -2.36
CD44-238ENST00000534296 SPEF2Q9C093 1822 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms