RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-215	ENST00000533440	SS18	Q15532	418 aa		4.61	□□□□□ -1.67
NXF1-215	ENST00000533440	RNF151	Q2KHN1	245 aa		4.61	□□□□□ -1.67
NXF1-215	ENST00000533440	EIF5AL1	Q6IS14	154 aa	Known RBP	4.61	□□□□□ -1.67
NXF1-215	ENST00000533440	OR2D3	Q8NGH3	330 aa		4.61	□□□□□ -1.67
NXF1-215	ENST00000533440	TMEM101	Q96IK0	257 aa		4.61	□□□□□ -1.67
NXF1-215	ENST00000533440	BTF3L4	Q96K17	158 aa		4.61	□□□□□ -1.67
NXF1-215	ENST00000533440	CAMK2N2	Q96S95	79 aa		4.61	□□□□□ -1.67
NXF1-215	ENST00000533440	TMA7	Q9Y2S6	64 aa	Known RBP	4.61	□□□□□ -1.67
NXF1-215	ENST00000533440	C19orf71	A6NCJ1	209 aa		4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	BCL2L11	O43521	198 aa		4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	ESD	P10768	282 aa		4.6	□□□□□ -1.67
NXF1-215	ENST00000533440		Q5BKY6	102 aa		4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	LYZL1	Q6UWQ5	148 aa		4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	TMUB2	Q71RG4	321 aa		4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	RPL39L	Q96EH5	51 aa	Known RBP	4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	OPRPN	Q99935	248 aa	Predicted RBP	4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	RPP21	Q9H633	154 aa	Known RBP	4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	CDC42SE2	Q9NRR3	84 aa		4.6	□□□□□ -1.67
NXF1-215	ENST00000533440	FAM168B	A1KXE4	195 aa		4.59	□□□□□ -1.67
NXF1-215	ENST00000533440	SDHAF1	A6NFY7	115 aa		4.59	□□□□□ -1.67
NXF1-215	ENST00000533440	MAL	P21145	153 aa		4.59	□□□□□ -1.67
NXF1-215	ENST00000533440	RPL35	P42766	123 aa	Known RBP	4.59	□□□□□ -1.67
NXF1-215	ENST00000533440	MRPL52	Q86TS9	123 aa	Known RBP	4.59	□□□□□ -1.67
NXF1-215	ENST00000533440	C9orf62	Q8N4C0	152 aa		4.59	□□□□□ -1.67
NXF1-215	ENST00000533440	CNFN	Q9BYD5	112 aa		4.59	□□□□□ -1.67
NXF1-215	ENST00000533440	XKRY2	A2RUG3	117 aa		4.58	□□□□□ -1.68
NXF1-215	ENST00000533440	C1orf196	B1AJZ1	125 aa		4.58	□□□□□ -1.68
NXF1-215	ENST00000533440		G3V3Q6	166 aa		4.58	□□□□□ -1.68
NXF1-215	ENST00000533440		I3L3M4	83 aa		4.58	□□□□□ -1.68
NXF1-215	ENST00000533440	COX7A2L	O14548	114 aa		4.58	□□□□□ -1.68
NXF1-215	ENST00000533440	PFDN1	O60925	122 aa		4.58	□□□□□ -1.68
NXF1-215	ENST00000533440	KRTAP7-1	Q8IUC3	87 aa		4.58	□□□□□ -1.68
NXF1-215	ENST00000533440	MBD3L1	Q8WWY6	194 aa		4.58	□□□□□ -1.68
NXF1-215	ENST00000533440	TRBV6-5	A0A0K0K1A5	114 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	TSHB	P01222	138 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	IFNA1	P01562	189 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	TLX1NB	P0CAT3	122 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	PMCH	P20382	165 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	CTRL	P40313	264 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	DEFA1	P59665	94 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	TWIST1	Q15672	202 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	TPRXL	Q17RH7	258 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	FAM210A	Q96ND0	272 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	IMMP2L	Q96T52	175 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	CDIP1	Q9H305	208 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	CYTL1	Q9NRR1	136 aa		4.57	□□□□□ -1.68
NXF1-215	ENST00000533440	MRPL35	Q9NZE8	188 aa	Known RBP	4.57	□□□□□ -1.68
NXF1-215	ENST00000533440		A0A087X002	238 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440		F8WDY8	70 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	ZNF861P	O60384	105 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	UBE2B	P63146	152 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	SPAG11B	Q08648	103 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	CENPW	Q5EE01	88 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	TEX261	Q6UWH6	196 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	KCNRG	Q8N5I3	272 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	SFT2D1	Q8WV19	159 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	C11orf52	Q96A22	123 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	SMIM12	Q96EX1	92 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	MRAP2	Q96G30	205 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440	ALG5	Q9Y673	324 aa		4.56	□□□□□ -1.68
NXF1-215	ENST00000533440		M0QXV9	152 aa		4.55	□□□□□ -1.68
NXF1-215	ENST00000533440	FOXA3	P55318	350 aa	Predicted RBP	4.55	□□□□□ -1.68
NXF1-215	ENST00000533440	C5orf38	Q86SI9	138 aa		4.55	□□□□□ -1.68
NXF1-215	ENST00000533440	OR10D4P	Q8NGN7	298 aa		4.55	□□□□□ -1.68
NXF1-215	ENST00000533440	TMEM242	Q9NWH2	141 aa		4.55	□□□□□ -1.68
NXF1-215	ENST00000533440	FXYD6-FXYD2	A0A087WZ82	144 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440		A0A1B0GV50	99 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	C7orf77	A4D0Y5	90 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	GIP	P09681	153 aa	Predicted RBP	4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	POLR2K	P53803	58 aa	Known RBP	4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	LINC01547	P58512	204 aa	Predicted RBP	4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	CCL20	P78556	96 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	TMEM241	Q24JQ0	296 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	C10orf25	Q5T742	122 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	TYMSOS	Q8TAI1	123 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	RETNLB	Q9BQ08	111 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	RNASE7	Q9H1E1	156 aa	Known RBP	4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	SMDT1	Q9H4I9	107 aa		4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	CSDC2	Q9Y534	153 aa	Known RBP	4.54	□□□□□ -1.68
NXF1-215	ENST00000533440	TRAV13-1	A0A0B4J241	112 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	TRBV27	A0A0K0K1C4	114 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	RAB19	A4D1S5	217 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	NDUFA1	O15239	70 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	CRYGA	P11844	174 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	GNG4	P50150	75 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	GAGE2E	Q4V326	116 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	SMIM15	Q7Z3B0	74 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	NUDT10	Q8NFP7	164 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	FAM213B	Q8TBF2	198 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	NUDT11	Q96G61	164 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	C6orf48	Q9UBA6	75 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	GAGE2D	Q9UEU5	116 aa		4.53	□□□□□ -1.68
NXF1-215	ENST00000533440	TRBV20OR9-2	A0A075B6H5	130 aa		4.52	□□□□□ -1.69
NXF1-215	ENST00000533440	IGLV7-46	A0A075B6I9	117 aa		4.52	□□□□□ -1.69
NXF1-215	ENST00000533440	UMAD1	C9J7I0	102 aa		4.52	□□□□□ -1.69
NXF1-215	ENST00000533440	NUPR1	O60356	82 aa		4.52	□□□□□ -1.69
NXF1-215	ENST00000533440	RNASE13	Q5GAN3	156 aa	Known RBP	4.52	□□□□□ -1.69
NXF1-215	ENST00000533440	UNQ6190/PRO20217	Q6UXQ8	127 aa		4.52	□□□□□ -1.69
NXF1-215	ENST00000533440	ORAOV1	Q8WV07	137 aa		4.52	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 132 ms