RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 DEFB134Q4QY38 66 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 CASC2Q6XLA1 102 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 ZCCHC13Q8WW36 166 aaKnown RBP3.77□□□□□ -1.81
CD44-236ENST00000533222 KRTAP2-2Q9BYT5 123 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 C14orf132Q9NPU4 83 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 ARFGEF3Q5TH69 2177 aa3.76□□□□□ -1.81
CD44-236ENST00000533222 K7EQG2 157 aa3.76□□□□□ -1.81
CD44-236ENST00000533222 IGKV3-11P04433 115 aa3.76□□□□□ -1.81
CD44-236ENST00000533222 ATP1A1-AS1Q5TC04 95 aa3.76□□□□□ -1.81
CD44-236ENST00000533222 LINC00308Q8TCZ7 52 aa3.76□□□□□ -1.81
CD44-236ENST00000533222 LINC00574Q9H8X3 128 aa3.76□□□□□ -1.81
CD44-236ENST00000533222 H3BPC8 53 aa3.75□□□□□ -1.81
CD44-236ENST00000533222 H3BRN7 92 aa3.75□□□□□ -1.81
CD44-236ENST00000533222 BPY2O14599 106 aa3.75□□□□□ -1.81
CD44-236ENST00000533222 KRTAP10-9P60411 292 aa3.75□□□□□ -1.81
CD44-236ENST00000533222 CELA1Q9UNI1 258 aa3.75□□□□□ -1.81
CD44-236ENST00000533222 UNC13CQ8NB66 2214 aa3.75□□□□□ -1.81
CD44-236ENST00000533222 ALPK2Q86TB3 2170 aa3.75□□□□□ -1.81
CD44-236ENST00000533222 SPINK9Q5DT21 86 aa3.74□□□□□ -1.81
CD44-236ENST00000533222 FLVCR1-AS1Q8TAF5 88 aa3.74□□□□□ -1.81
CD44-236ENST00000533222 TMEM167AQ8TBQ9 72 aa3.74□□□□□ -1.81
CD44-236ENST00000533222 RETNLBQ9BQ08 111 aa3.74□□□□□ -1.81
CD44-236ENST00000533222 ESPL1Q14674 2120 aa3.74□□□□□ -1.81
CD44-236ENST00000533222 TRAV10A0A0B4J240 114 aa3.73□□□□□ -1.81
CD44-236ENST00000533222 IGHV7-4-1A0A0J9YVY3 117 aa3.73□□□□□ -1.81
CD44-236ENST00000533222 CNBPP62633 177 aaKnown RBP3.73□□□□□ -1.81
CD44-236ENST00000533222 RPS21P63220 83 aaKnown RBP3.73□□□□□ -1.81
CD44-236ENST00000533222 MOBPQ13875 183 aa3.73□□□□□ -1.81
CD44-236ENST00000533222 MIR7-3HGQ8N6C7 128 aa3.73□□□□□ -1.81
CD44-236ENST00000533222 SPTSSBQ8NFR3 76 aa3.73□□□□□ -1.81
CD44-236ENST00000533222 CHCHD10Q8WYQ3 142 aaPredicted RBP3.73□□□□□ -1.81
CD44-236ENST00000533222 FREM1Q5H8C1 2179 aa3.73□□□□□ -1.81
CD44-236ENST00000533222 H0YGG7 62 aa3.72□□□□□ -1.81
CD44-236ENST00000533222 CDK2AP2O75956 126 aa3.72□□□□□ -1.81
CD44-236ENST00000533222 IGKV3-20P01619 116 aa3.72□□□□□ -1.81
CD44-236ENST00000533222 CRPP02741 224 aa3.72□□□□□ -1.81
CD44-236ENST00000533222 Q6ZQT0 140 aa3.72□□□□□ -1.81
CD44-236ENST00000533222 ZNRF1Q8ND25 227 aa3.72□□□□□ -1.81
CD44-236ENST00000533222 FAM218AQ96MZ4 157 aa3.72□□□□□ -1.81
CD44-236ENST00000533222 PLAC8Q9NZF1 115 aa3.72□□□□□ -1.81
CD44-236ENST00000533222 KNTC1P50748 2209 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 IGHV3OR16-13A0A075B7E8 117 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 A6NED7 52 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 GAS8-AS1O95177 125 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 LY6G6DO95868 133 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 IGHV4-38-2P0DP08 117 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 HCP5Q6MZN7 132 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 FGF23Q9GZV9 251 aaPredicted RBP3.71□□□□□ -1.82
CD44-236ENST00000533222 KLK9Q9UKQ9 250 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 LINC01558Q9Y6Z2 57 aa3.71□□□□□ -1.82
CD44-236ENST00000533222 IGKV3D-11A0A0A0MRZ8 115 aa3.7□□□□□ -1.82
CD44-236ENST00000533222 TRAV12-3A0A0B4J271 114 aa3.7□□□□□ -1.82
CD44-236ENST00000533222 C10orf142B7Z368 130 aa3.7□□□□□ -1.82
CD44-236ENST00000533222 LINC01565O15544 149 aa3.7□□□□□ -1.82
CD44-236ENST00000533222 ZNF32P17041 273 aa3.7□□□□□ -1.82
CD44-236ENST00000533222 C20orf203Q8NBC4 194 aa3.7□□□□□ -1.82
CD44-236ENST00000533222 ARHGAP32A7KAX9 2087 aa3.7□□□□□ -1.82
CD44-236ENST00000533222 IGHV3-72A0A0B4J1Y9 119 aa3.69□□□□□ -1.82
CD44-236ENST00000533222 TRAV21A0A0B4J279 112 aa3.69□□□□□ -1.82
CD44-236ENST00000533222 IGKV3D-20A0A0C4DH25 116 aa3.69□□□□□ -1.82
CD44-236ENST00000533222 SMIM1B2RUZ4 78 aa3.69□□□□□ -1.82
CD44-236ENST00000533222 CGB3P0DN86 165 aa3.69□□□□□ -1.82
CD44-236ENST00000533222 CGB7P0DN87 165 aa3.69□□□□□ -1.82
CD44-236ENST00000533222 FAM104AQ969W3 186 aa3.69□□□□□ -1.82
CD44-236ENST00000533222 ZNF706Q9Y5V0 76 aaPredicted RBP3.69□□□□□ -1.82
CD44-236ENST00000533222 S4R3C0 116 aa3.69□□□□□ -1.82
CD44-236ENST00000533222 DSCAML1Q8TD84 2053 aa3.68□□□□□ -1.82
CD44-236ENST00000533222 IGLV4-3A0A075B6K6 122 aa3.68□□□□□ -1.82
CD44-236ENST00000533222 TRBV10-1A0A0K0K1A3 114 aa3.68□□□□□ -1.82
CD44-236ENST00000533222 IGLV1-51P01701 117 aa3.68□□□□□ -1.82
CD44-236ENST00000533222 BSPH1Q075Z2 132 aa3.68□□□□□ -1.82
CD44-236ENST00000533222 LINC00208Q96KT6 92 aa3.68□□□□□ -1.82
CD44-236ENST00000533222 IGHV3-73A0A0B4J1V6 119 aa3.67□□□□□ -1.82
CD44-236ENST00000533222 IGLV9-49A0A0B4J1Y8 123 aa3.67□□□□□ -1.82
CD44-236ENST00000533222 IGKV2-29A2NJV5 120 aaPredicted RBP3.67□□□□□ -1.82
CD44-236ENST00000533222 RTL8CO15255 209 aa3.67□□□□□ -1.82
CD44-236ENST00000533222 IGHV3-43DP0DP04 118 aa3.67□□□□□ -1.82
CD44-236ENST00000533222 WT1-ASQ06250 92 aa3.67□□□□□ -1.82
CD44-236ENST00000533222 Q8N814 137 aa3.67□□□□□ -1.82
CD44-236ENST00000533222 B9D2Q9BPU9 175 aa3.67□□□□□ -1.82
CD44-236ENST00000533222 CACNA1DQ01668 2161 aa3.67□□□□□ -1.82
CD44-236ENST00000533222 IGHV3-49A0A0A0MS15 119 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 IGHV3-35A0A0C4DH35 117 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 NCR3O14931 201 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 MUC7Q8TAX7 377 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 PRAC1Q96KF2 57 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 RNF5Q99942 180 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 PRR15LQ9BU68 103 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 HIGD2AQ9BW72 106 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 KCNQ1DNQ9H478 68 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 Q9Y3F1 56 aa3.66□□□□□ -1.82
CD44-236ENST00000533222 PLXNB1O43157 2135 aa3.65□□□□□ -1.82
CD44-236ENST00000533222 IGHV1OR15-1A0A075B7D0 117 aa3.65□□□□□ -1.83
CD44-236ENST00000533222 LECT2O14960 151 aa3.65□□□□□ -1.83
CD44-236ENST00000533222 CCL5P13501 91 aa3.65□□□□□ -1.83
CD44-236ENST00000533222 LINC00315P59091 139 aa3.65□□□□□ -1.83
CD44-236ENST00000533222 HAMPP81172 84 aa3.65□□□□□ -1.83
CD44-236ENST00000533222 C9orf129Q5T035 196 aaKnown RBP3.65□□□□□ -1.83
CD44-236ENST00000533222 Q6ZS52 159 aa3.65□□□□□ -1.83
CD44-236ENST00000533222 NTM-AS1Q6ZSK4 140 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms