RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 STPG4Q8N801 248 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 C3orf56Q8N813 242 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 OR10AG1Q8NH19 301 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BHQ93079 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 ODF3Q96PU9 254 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BNQ99877 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BMQ99879 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 OVOL2Q9BRP0 275 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 GFRA4Q9GZZ7 299 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 EDA2RQ9HAV5 297 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 IGHV1OR15-1A0A075B7D0 117 aa3□□□□□ -1.93
CD44-226ENST00000527889 A6NDN8 102 aa3□□□□□ -1.93
CD44-226ENST00000527889 F2Z2F3 143 aa3□□□□□ -1.93
CD44-226ENST00000527889 ZNF324O75467 553 aaPredicted RBP3□□□□□ -1.93
CD44-226ENST00000527889 HLA-DQA1P01909 254 aa3□□□□□ -1.93
CD44-226ENST00000527889 APCSP02743 223 aa3□□□□□ -1.93
CD44-226ENST00000527889 IGLL1P15814 213 aa3□□□□□ -1.93
CD44-226ENST00000527889 TTC32Q5I0X7 151 aa3□□□□□ -1.93
CD44-226ENST00000527889 HRCT1Q6UXD1 115 aa3□□□□□ -1.93
CD44-226ENST00000527889 GNB1LQ9BYB4 327 aa3□□□□□ -1.93
CD44-226ENST00000527889 JPT2Q9H910 190 aa3□□□□□ -1.93
CD44-226ENST00000527889 Q9HAA7 133 aa3□□□□□ -1.93
CD44-226ENST00000527889 XCL2Q9UBD3 114 aa3□□□□□ -1.93
CD44-226ENST00000527889 TP53TG3Q9ULZ0 132 aa3□□□□□ -1.93
CD44-226ENST00000527889 TENM2Q9NT68 2774 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 STAB2Q8WWQ8 2551 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 IGHV3OR16-12A0A075B7B8 117 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 M0R381 172 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 INSP01308 110 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 MT-ND6P03923 174 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 SPINK8P0C7L1 97 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 FGF6P10767 208 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 RNASE3P12724 160 aaKnown RBP2.99□□□□□ -1.93
CD44-226ENST00000527889 FABP4P15090 132 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 HTN1P15515 57 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 S100A4P26447 101 aaKnown RBP2.99□□□□□ -1.93
CD44-226ENST00000527889 ASIPP42127 132 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 HNRNPA3P51991 378 aaKnown RBP2.99□□□□□ -1.93
CD44-226ENST00000527889 C12orf74Q32Q52 190 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 MEIG1Q5JSS6 88 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 SPANXN1Q5VSR9 72 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 Q6ZN92 141 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 AMN1Q8IY45 258 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 HIST3H2BBQ8N257 126 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 DEFB125Q8N687 156 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 PRAC1Q96KF2 57 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 TMEM191AQ9H0A3 160 aa2.99□□□□□ -1.93
CD44-226ENST00000527889 IGHV4-4A0A075B6R2 117 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 IGHV3-16A0A0C4DH30 117 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 SMIM1B2RUZ4 78 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 D6R8Y8 96 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 NUPR1O60356 82 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 NCR2O95944 276 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 ATP5G1P05496 136 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 GIG44P09565 113 aaPredicted RBP2.98□□□□□ -1.93
CD44-226ENST00000527889 LINC00694P0DN24 101 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 INSL3P51460 131 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 CMC4P56277 68 aaPredicted RBP2.98□□□□□ -1.93
CD44-226ENST00000527889 DAD1P61803 113 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 CACNG7P62955 275 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 MRPL51Q4U2R6 128 aaKnown RBP2.98□□□□□ -1.93
CD44-226ENST00000527889 FAM104BQ5XKR9 115 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 KRTAP5-3Q6L8H2 238 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 GTSCR1Q86UQ5 136 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 TMEM256Q8N2U0 113 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 WFDC9Q8NEX5 89 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 KCNS1Q96KK3 526 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 LINC01587Q99440 93 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 CNFNQ9BYD5 112 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 SCRT2Q9NQ03 307 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 MDFICQ9P1T7 246 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 UQCR10Q9UDW1 63 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 PHLDA3Q9Y5J5 127 aa2.98□□□□□ -1.93
CD44-226ENST00000527889 SACSQ9NZJ4 4579 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 IFITM10A6NMD0 228 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 H7C1H1 209 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 SERF1AO75920 110 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 GAS8-AS1O95177 125 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 MGPP08493 103 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 IFITM1P13164 125 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 PFN2P35080 140 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 PSMB2P49721 201 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 KRTAP10-11P60412 298 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 TDRG1Q3Y452 100 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 ZNF493Q6ZR52 646 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 BAGE3Q86Y29 109 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 C14orf178Q8N769 122 aaPredicted RBP2.97□□□□□ -1.93
CD44-226ENST00000527889 C18orf32Q8TCD1 76 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 RAB37Q96AX2 223 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 RNF185Q96GF1 192 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 PRELID3AQ96N28 172 aa2.97□□□□□ -1.93
CD44-226ENST00000527889 DYNC2H1Q8NCM8 4307 aaKnown RBP2.96□□□□□ -1.94
CD44-226ENST00000527889 LOC389332A0A1B0GUA5 103 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 PLAC8L1A1L4L8 177 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 J3QQQ9 107 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 NXPH4O95158 308 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 NPYP01303 97 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 CKS2P33552 79 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 NDUFV3P56181 108 aaKnown RBP2.96□□□□□ -1.94
CD44-226ENST00000527889 NANOS2P60321 138 aaKnown RBP2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms