RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 B9D2Q9BPU9 175 aa13.3□□□□□ -0.28
VPS28-207ENST00000526977 UBE2D4Q9Y2X8 147 aa13.3□□□□□ -0.28
VPS28-207ENST00000526977 TAX1BP3O14907 124 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 NFE4Q86UQ8 179 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 AMELXQ99217 191 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 CELA1Q9UNI1 258 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 TRGV4A0A0C4DH28 118 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 GAGE12JA6NER3 117 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 UBE2D3P61077 147 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 UBE2D2P62837 147 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 GAGE1Q13065 139 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 GAGE4Q13068 117 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 GAGE5Q13069 117 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 GAGE13Q4V321 117 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 ORAOV1Q8WV07 137 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 PRADC1Q9BSG0 188 aa13.29□□□□□ -0.28
VPS28-207ENST00000526977 TRBV6-4A0A1B0GX49 114 aa13.28□□□□□ -0.28
VPS28-207ENST00000526977 NPSP0C0P6 89 aa13.28□□□□□ -0.28
VPS28-207ENST00000526977 CRYBA4P53673 196 aa13.28□□□□□ -0.28
VPS28-207ENST00000526977 SEC11AP67812 179 aa13.28□□□□□ -0.28
VPS28-207ENST00000526977 FHL2Q14192 279 aa13.28□□□□□ -0.28
VPS28-207ENST00000526977 DAZ4Q86SG3 579 aaKnown RBP13.28□□□□□ -0.28
VPS28-207ENST00000526977 DAZ3Q9NR90 486 aaKnown RBP13.28□□□□□ -0.28
VPS28-207ENST00000526977 SPANXA1Q9NS26 97 aa13.28□□□□□ -0.28
VPS28-207ENST00000526977 TMEM170BQ5T4T1 132 aa13.27□□□□□ -0.29
VPS28-207ENST00000526977 NTM-AS1Q6ZSK4 140 aa13.27□□□□□ -0.29
VPS28-207ENST00000526977 A0A0J9YWU9 116 aa13.26□□□□□ -0.29
VPS28-207ENST00000526977 A0A0J9YXV3 536 aa13.26□□□□□ -0.29
VPS28-207ENST00000526977 CHAC1Q9BUX1 264 aa13.26□□□□□ -0.29
VPS28-207ENST00000526977 MYMXA0A1B0GTQ4 84 aa13.25□□□□□ -0.29
VPS28-207ENST00000526977 ATP5G1P05496 136 aa13.25□□□□□ -0.29
VPS28-207ENST00000526977 LOC100131303A0A0U1RQF7 123 aa13.25□□□□□ -0.29
VPS28-207ENST00000526977 HERVK_113P61574 105 aa13.24□□□□□ -0.29
VPS28-207ENST00000526977 RNASE13Q5GAN3 156 aaKnown RBP13.24□□□□□ -0.29
VPS28-207ENST00000526977 C12orf74Q32Q52 190 aa13.23□□□□□ -0.29
VPS28-207ENST00000526977 TIMM21Q9BVV7 248 aa13.23□□□□□ -0.29
VPS28-207ENST00000526977 PRO0255Q9UI72 69 aa13.23□□□□□ -0.29
VPS28-207ENST00000526977 NHLRC4P0CG21 123 aaPredicted RBP13.22□□□□□ -0.29
VPS28-207ENST00000526977 ZNF22P17026 224 aaPredicted RBP13.22□□□□□ -0.29
VPS28-207ENST00000526977 Q6ZUT4 128 aa13.22□□□□□ -0.29
VPS28-207ENST00000526977 MRPS36P82909 103 aaKnown RBP13.22□□□□□ -0.29
VPS28-207ENST00000526977 C11orf45Q8TAV5 145 aa13.22□□□□□ -0.29
VPS28-207ENST00000526977 TMEM223A0PJW6 202 aa13.21□□□□□ -0.29
VPS28-207ENST00000526977 LINC00694P0DN24 101 aa13.21□□□□□ -0.29
VPS28-207ENST00000526977 GTSF1LQ9H1H1 148 aa13.21□□□□□ -0.29
VPS28-207ENST00000526977 A6NDN8 102 aa13.2□□□□□ -0.3
VPS28-207ENST00000526977 ZNF815PA8K554 130 aa13.2□□□□□ -0.3
VPS28-207ENST00000526977 K7EP13 123 aa13.19□□□□□ -0.3
VPS28-207ENST00000526977 GCSHP23434 173 aa13.19□□□□□ -0.3
VPS28-207ENST00000526977 FXYD2P54710 66 aa13.19□□□□□ -0.3
VPS28-207ENST00000526977 DGAT2L7PQ6IED9 249 aa13.19□□□□□ -0.3
VPS28-207ENST00000526977 F5H768 121 aa13.18□□□□□ -0.3
VPS28-207ENST00000526977 TSPEAR-AS2P59090 65 aa13.18□□□□□ -0.3
VPS28-207ENST00000526977 TM2D2Q9BX73 214 aa13.18□□□□□ -0.3
VPS28-207ENST00000526977 TENM3Q9P273 2699 aa13.18□□□□□ -0.3
VPS28-207ENST00000526977 CEND1Q8N111 149 aa13.18□□□□□ -0.3
VPS28-207ENST00000526977 CSDC2Q9Y534 153 aaKnown RBP13.18□□□□□ -0.3
VPS28-207ENST00000526977 TINCRA0A1B0GVN0 87 aa13.17□□□□□ -0.3
VPS28-207ENST00000526977 H3BRM9 83 aa13.17□□□□□ -0.3
VPS28-207ENST00000526977 PAX4O43316 350 aa13.17□□□□□ -0.3
VPS28-207ENST00000526977 J3QQQ9 107 aa13.17□□□□□ -0.3
VPS28-207ENST00000526977 TAL2Q16559 108 aa13.17□□□□□ -0.3
VPS28-207ENST00000526977 PLEKHB2Q96CS7 222 aa13.17□□□□□ -0.3
VPS28-207ENST00000526977 LEPROTO15243 131 aa13.16□□□□□ -0.3
VPS28-207ENST00000526977 HTN3P15516 51 aa13.16□□□□□ -0.3
VPS28-207ENST00000526977 UBE2D1P51668 147 aa13.16□□□□□ -0.3
VPS28-207ENST00000526977 Q6ZTC4 211 aa13.16□□□□□ -0.3
VPS28-207ENST00000526977 TMEM243Q9BU79 118 aa13.16□□□□□ -0.3
VPS28-207ENST00000526977 CCL25O15444 150 aa13.15□□□□□ -0.3
VPS28-207ENST00000526977 UBE2V1Q13404 147 aa13.15□□□□□ -0.3
VPS28-207ENST00000526977 GYPEP15421 78 aa13.15□□□□□ -0.3
VPS28-207ENST00000526977 NANOS2P60321 138 aaKnown RBP13.15□□□□□ -0.3
VPS28-207ENST00000526977 VAMP3Q15836 100 aa13.15□□□□□ -0.3
VPS28-207ENST00000526977 HIST1H4GQ99525 98 aa13.15□□□□□ -0.3
VPS28-207ENST00000526977 IGHV3-64A0A075B6Q5 118 aa13.13□□□□□ -0.31
VPS28-207ENST00000526977 TRAV26-1A0A087WT03 109 aa13.13□□□□□ -0.31
VPS28-207ENST00000526977 SCGB1D4Q6XE38 83 aa13.13□□□□□ -0.31
VPS28-207ENST00000526977 VSIG2Q96IQ7 327 aa13.13□□□□□ -0.31
VPS28-207ENST00000526977 CDC42SE2Q9NRR3 84 aa13.13□□□□□ -0.31
VPS28-207ENST00000526977 HUWE1Q7Z6Z7 4374 aaKnown RBP13.13□□□□□ -0.31
VPS28-207ENST00000526977 C9orf118A6NHY6 69 aa13.13□□□□□ -0.31
VPS28-207ENST00000526977 LGALS3P17931 250 aaKnown RBP13.13□□□□□ -0.31
VPS28-207ENST00000526977 PTTG1IPP53801 180 aa13.13□□□□□ -0.31
VPS28-207ENST00000526977 MEGF8Q7Z7M0 2845 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 SMAGPQ0VAQ4 97 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 AMMECR1LQ6DCA0 310 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 TRBV6-8A0A0A6YYG3 113 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 A0A0J9YY99 117 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 H7C423 109 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 UBE2L6O14933 153 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 TIRAPP58753 221 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 OR5A1Q8NGJ0 315 aa13.12□□□□□ -0.31
VPS28-207ENST00000526977 H3BNG1 76 aa13.11□□□□□ -0.31
VPS28-207ENST00000526977 SMIM13P0DJ93 91 aa13.11□□□□□ -0.31
VPS28-207ENST00000526977 RAB37Q96AX2 223 aa13.11□□□□□ -0.31
VPS28-207ENST00000526977 GEMIN7Q9H840 131 aaKnown RBP13.11□□□□□ -0.31
VPS28-207ENST00000526977 DEFB131BA0A096LNP1 70 aa13.1□□□□□ -0.31
VPS28-207ENST00000526977 IGHV3-30-3P0DP02 117 aa13.1□□□□□ -0.31
VPS28-207ENST00000526977 DNAH9Q9NYC9 4486 aa13.1□□□□□ -0.31
VPS28-207ENST00000526977 TRAV8-3A0A0A6YYJ7 113 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms