RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PDE6DO43924 150 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 LTAP01374 205 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 P01737 135 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 CRPP02741 224 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 FUSP35637 526 aaKnown RBP eCLIP2.29□□□□□ -2.04
NUP54-212ENST00000513248 RPL35P42766 123 aaKnown RBP2.29□□□□□ -2.04
NUP54-212ENST00000513248 GNG4P50150 75 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 RPL19P84098 196 aaKnown RBP2.29□□□□□ -2.04
NUP54-212ENST00000513248 ELOBQ15370 118 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 SMIM15Q7Z3B0 74 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 SLC51BQ86UW2 128 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 FER1L6-AS1Q8NA97 138 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 OR2D3Q8NGH3 330 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 MBD3L1Q8WWY6 194 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 SFRP2Q96HF1 295 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 AP1S3Q96PC3 154 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 SAMD10Q9BYL1 202 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 BIN3Q9NQY0 253 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 HUWE1Q7Z6Z7 4374 aaKnown RBP2.28□□□□□ -2.04
NUP54-212ENST00000513248 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.28□□□□□ -2.04
NUP54-212ENST00000513248 TRBV7-3A0A075B6L6 115 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 IGKV2D-24A0A075B6R9 120 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 TRBV10-1A0A0K0K1A3 114 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 RAB19A4D1S5 217 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 RBFOX3A6NFN3 312 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 IBA57-AS1B1ANH7 110 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 H7C1H1 209 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 LECT2O14960 151 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 SNAPINO95295 136 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 C1QBP02746 253 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 ANGP03950 147 aaKnown RBP2.28□□□□□ -2.04
NUP54-212ENST00000513248 TRGC1P0CF51 173 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 TAGLN2P37802 199 aaKnown RBP2.28□□□□□ -2.04
NUP54-212ENST00000513248 SULT1A2P50226 295 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 CRIP1P50238 77 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 RAB4BP61018 213 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 PKIAP61925 76 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 CACNG7P62955 275 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 MEF2BQ02080 365 aaPredicted RBP2.28□□□□□ -2.04
NUP54-212ENST00000513248 TMEM97Q5BJF2 176 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 CENPWQ5EE01 88 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 LINC01556Q5JQF7 62 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 DAZ4Q86SG3 579 aaKnown RBP2.28□□□□□ -2.04
NUP54-212ENST00000513248 TCTE3Q8IZS6 198 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 OR10AG1Q8NH19 301 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 FRZBQ92765 325 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 UBE2WQ96B02 151 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 BORCS7Q96B45 105 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 VAX2Q9UIW0 290 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 KLK12Q9UKR0 248 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 DNAH7Q8WXX0 4024 aa2.28□□□□□ -2.04
NUP54-212ENST00000513248 TRAV1-1A0A0B4J248 108 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 F2Z2F3 143 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 UBE2L6O14933 153 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 CXCL1P09341 107 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 GZMBP10144 247 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 BCL2P10415 239 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 CCL20P78556 96 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 Q0VG73 95 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 DNLZQ5SXM8 178 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 ALKAL2Q6UX46 152 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 Q6ZRN7 208 aaPredicted RBP2.27□□□□□ -2.05
NUP54-212ENST00000513248 BAALCQ8WXS3 180 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 PGLYRP4Q96LB8 373 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 DERL1Q9BUN8 251 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 EIF5A2Q9GZV4 153 aaKnown RBP2.27□□□□□ -2.05
NUP54-212ENST00000513248 DNAH10Q8IVF4 4471 aa2.27□□□□□ -2.05
NUP54-212ENST00000513248 TRBV25-1A0A075B6N4 114 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 TRBV6-8A0A0A6YYG3 113 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 IGHV1-24A0A0C4DH33 117 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 IGKV3OR2-268A0A0C4DH90 116 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 SNAI2O43623 268 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 GATCO43716 136 aaKnown RBP2.26□□□□□ -2.05
NUP54-212ENST00000513248 HLA-DQA1P01909 254 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 OR5AL1P0C617 328 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 NKX2-5P52952 324 aaPredicted RBP2.26□□□□□ -2.05
NUP54-212ENST00000513248 UBE2D3P61077 147 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 UBE2D2P62837 147 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 HAMPP81172 84 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 AMMECR1LQ6DCA0 310 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 RASL11AQ6T310 242 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 CLPSL2Q6UWE3 100 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 LYZL1Q6UWQ5 148 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 NIT1Q86X76 327 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 Q8N814 137 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 Q8N976 141 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 Q8N9L7 120 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 SMIM12Q96EX1 92 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 DPH3Q96FX2 82 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 DNAJC30Q96LL9 226 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 CHCHD7Q9BUK0 85 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 DPH3P1Q9H4G8 78 aa2.26□□□□□ -2.05
NUP54-212ENST00000513248 RPP21Q9H633 154 aaKnown RBP2.26□□□□□ -2.05
NUP54-212ENST00000513248 ZNF727A8MUV8 499 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 A8MWL6 223 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 SMR3BP02814 79 aaPredicted RBP2.25□□□□□ -2.05
NUP54-212ENST00000513248 INAFM2P0DMQ5 153 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 PMCHP20382 165 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 NTF3P20783 257 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 COTL1Q14019 142 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms