RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 CDC42SE1Q9NRR8 79 aa3.5□□□□□ -1.85
NUP54-210ENST00000510884 PRRC2BQ5JSZ5 2229 aaKnown RBP3.5□□□□□ -1.85
NUP54-210ENST00000510884 OTOGLQ3ZCN5 2332 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 ARHGAP21Q5T5U3 1957 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 GREB1Q4ZG55 1949 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 IGHV1OR15-1A0A075B7D0 117 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 IGHV7-81A0A0B4J1V7 117 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 TRAV12-1A0A0B4J245 112 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 LINC01546A6NGU7 62 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 IGHV3-33P01772 117 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 IGFL3Q6UXB1 125 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 SMCR5Q8TEV8 140 aa3.49□□□□□ -1.85
NUP54-210ENST00000510884 NBEAL1Q6ZS30 2694 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 CREBBPQ92793 2442 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 IGLV2-8P01709 118 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 IGHV3-48P01763 117 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 IGHV1-2P23083 117 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 CCL14Q16627 93 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 CASC2Q6XLA1 102 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 RPS27LQ71UM5 84 aaKnown RBP3.48□□□□□ -1.85
NUP54-210ENST00000510884 LYZL2Q7Z4W2 148 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 TMEM105Q8N8V8 129 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 DPM3Q9P2X0 92 aa3.48□□□□□ -1.85
NUP54-210ENST00000510884 LTBP2Q14767 1821 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 IGKV2D-26A0A0A0MRZ7 120 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 IGHV3-72A0A0B4J1Y9 119 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 hDV103S1A0JD37 113 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 HIGD1CA8MV81 97 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 HCG22E2RYF7 251 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 BGLAPP02818 100 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 COX7A1P24310 79 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 C2orf83Q53S99 150 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 C9orf116Q5BN46 136 aaPredicted RBP3.47□□□□□ -1.85
NUP54-210ENST00000510884 RETNLBQ9BQ08 111 aa3.47□□□□□ -1.85
NUP54-210ENST00000510884 FBN1P35555 2871 aaKnown RBP3.46□□□□□ -1.85
NUP54-210ENST00000510884 PHF3Q92576 2039 aaKnown RBP3.46□□□□□ -1.86
NUP54-210ENST00000510884 SHROOM3Q8TF72 1996 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 TRAV22A0A0B4J277 110 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 IGKV1-12A0A0C4DH73 117 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 SDHAF1A6NFY7 115 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 C11orf86A6NJI1 115 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 TMEM14DPA8MWL7 114 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 E7EUB6 86 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 SPINK4O60575 86 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 IGKV1D-12P01611 117 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 PRB1P04280 392 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 SPTSSBQ8NFR3 76 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 PFN4Q8NHR9 129 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 FLVCR1-AS1Q8TAF5 88 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 RPP21Q9H633 154 aaKnown RBP3.46□□□□□ -1.86
NUP54-210ENST00000510884 PROK2Q9HC23 129 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 ZNF355PQ9NSJ1 428 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 PSENENQ9NZ42 101 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 U3KQK5 164 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 DOCK11Q5JSL3 2073 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 ANAPC1Q9H1A4 1944 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 NUMA1Q14980 2115 aa3.46□□□□□ -1.86
NUP54-210ENST00000510884 IGLV3-9A0A075B6K5 115 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 IGHV5-51A0A0C4DH38 117 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 C16orf90A8MZG2 172 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 F8VRH5 84 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 K7EMI3 77 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 IGKV1D-33P01593 117 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 IGKV1-33P01594 117 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 IGHV3-30P01768 117 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 IGHV3-30-5P0DP03 117 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 GDF5OSQ5U4N7 250 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 TMEM263Q8WUH6 116 aaKnown RBP3.45□□□□□ -1.86
NUP54-210ENST00000510884 FAM104AQ969W3 186 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 ICOSQ9Y6W8 199 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 C2orf16Q68DN1 1984 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 EML6Q6ZMW3 1958 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 KIAA1549Q9HCM3 1950 aa3.45□□□□□ -1.86
NUP54-210ENST00000510884 ANKRD12Q6UB98 2062 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 TRAV23DV6A0A075B6W5 121 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 A0A096LNJ9 63 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 C5orf67F2Z3F1 127 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 CHKB-CPT1BH3BT56 60 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 MSMBP08118 114 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 TMEM61Q8N0U2 210 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 LCE3DQ9BYE3 92 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 BPESC1Q9GZL8 116 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 CCL28Q9NRJ3 127 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 TMEM14BQ9NUH8 114 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 DHRS4-AS1Q9P1J3 65 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 SPG11Q96JI7 2443 aa3.44□□□□□ -1.86
NUP54-210ENST00000510884 COL11A1P12107 1806 aaPredicted RBP3.44□□□□□ -1.86
NUP54-210ENST00000510884 PCNX1Q96RV3 2341 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 PLXNB3Q9ULL4 1909 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 PLXNB2O15031 1838 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 KIAA1549LQ6ZVL6 1849 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 TRBV6-8A0A0A6YYG3 113 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 IGHV3-74A0A0B4J1X5 117 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 A0A0J9YX75 114 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 TRBV7-4A0A0J9YYF1 115 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 A0A1B0GUT8 65 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 D6R8Y8 96 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 TRGV3P03979 118 aa3.43□□□□□ -1.86
NUP54-210ENST00000510884 SAA2P0DJI9 122 aaPredicted RBP3.43□□□□□ -1.86
NUP54-210ENST00000510884 ARL14EPLP0DKL9 152 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 162.4 ms