RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 GTSF1Q8WW33 167 aa2.99□□□□□ -1.93
NUP54-206ENST00000508465 UBE2WQ96B02 151 aa2.99□□□□□ -1.93
NUP54-206ENST00000508465 SMIM7Q9BQ49 75 aa2.99□□□□□ -1.93
NUP54-206ENST00000508465 CHCHD5Q9BSY4 110 aa2.99□□□□□ -1.93
NUP54-206ENST00000508465 RPP21Q9H633 154 aaKnown RBP2.99□□□□□ -1.93
NUP54-206ENST00000508465 BIN3Q9NQY0 253 aa2.99□□□□□ -1.93
NUP54-206ENST00000508465 URGCP-MRPS24S4R325 110 aa2.99□□□□□ -1.93
NUP54-206ENST00000508465 DNAH5Q8TE73 4624 aa2.99□□□□□ -1.93
NUP54-206ENST00000508465 IGKV2D-24A0A075B6R9 120 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 A0A087WZ39 114 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 TRBV6-8A0A0A6YYG3 113 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 ZNF727A8MUV8 499 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 TMEM250H0YL14 139 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 K7EP13 123 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 XGP55808 180 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 KRTAP12-2P59991 146 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 TMEM241Q24JQ0 296 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 LINC01620Q4KN68 170 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 ATRAIDQ6UW56 229 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 CLPSL2Q6UWE3 100 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 TEX261Q6UWH6 196 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 ENHOQ6UWT2 76 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 C15orf54Q8N8G6 183 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 Q8N976 141 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 GATD1Q8NB37 220 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 OR10G8Q8NGN5 311 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 RPL39LQ96EH5 51 aaKnown RBP2.98□□□□□ -1.93
NUP54-206ENST00000508465 FAM210AQ96ND0 272 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 AP1S3Q96PC3 154 aa2.98□□□□□ -1.93
NUP54-206ENST00000508465 APOBP04114 4563 aaKnown RBP2.98□□□□□ -1.93
NUP54-206ENST00000508465 SRRM2Q9UQ35 2752 aaKnown RBP2.97□□□□□ -1.93
NUP54-206ENST00000508465 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.97□□□□□ -1.93
NUP54-206ENST00000508465 TRAV8-3A0A0A6YYJ7 113 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 A8MWL6 223 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 SMR3BP02814 79 aaPredicted RBP2.97□□□□□ -1.93
NUP54-206ENST00000508465 ANGP03950 147 aaKnown RBP2.97□□□□□ -1.93
NUP54-206ENST00000508465 TRGC1P0CF51 173 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 CTRLP40313 264 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 RBX1P62877 108 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 MPV17L2Q567V2 206 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 KCNIP4Q6PIL6 250 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 RASL11AQ6T310 242 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 LINC01551Q86U37 167 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 LINC00518Q8N0U6 118 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 LINC00269Q8N2A0 174 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 Q8N814 137 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 SMIM12Q96EX1 92 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 DPH3P1Q9H4G8 78 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 NIT2Q9NQR4 276 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 ABCA13Q86UQ4 5058 aa2.97□□□□□ -1.93
NUP54-206ENST00000508465 IGLV4-60A0A075B6I1 120 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 IGHV1-24A0A0C4DH33 117 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 PCP4L1A6NKN8 68 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 KRTAP16-1A8MUX0 517 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 SMKR1H3BMG3 65 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 H7C1H1 209 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 RPL23P62829 140 aaKnown RBP2.96□□□□□ -1.94
NUP54-206ENST00000508465 LAGE3Q14657 143 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 PEA15Q15121 130 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 ADIRFQ15847 76 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 Q6ZVQ6 151 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 FAM231DQ6ZW35 169 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.96□□□□□ -1.94
NUP54-206ENST00000508465 RPS10P5Q9NQ39 176 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 OSTCQ9NRP0 149 aa2.96□□□□□ -1.94
NUP54-206ENST00000508465 IGLV10-54A0A075B6I4 117 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 TRBV25-1A0A075B6N4 114 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 IGKV3OR2-268A0A0C4DH90 116 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 A0A1B0GUT8 65 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 NDUFAF8A1L188 74 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 HIGD1CA8MV81 97 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 SMIM1B2RUZ4 78 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 RAB4AP20338 218 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 PMCHP20382 165 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 ELOBQ15370 118 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 IQCJQ1A5X6 159 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 SMIM15Q7Z3B0 74 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 NUP35Q8NFH5 326 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 TSKUQ8WUA8 353 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 ISOC2Q96AB3 205 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 RMI2Q96E14 147 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 RNF185Q96GF1 192 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 TMEM243Q9BU79 118 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 CNFNQ9BYD5 112 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 V9GYV3 84 aa2.95□□□□□ -1.94
NUP54-206ENST00000508465 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.94□□□□□ -1.94
NUP54-206ENST00000508465 IGKV2-29A2NJV5 120 aaPredicted RBP2.94□□□□□ -1.94
NUP54-206ENST00000508465 FAM231BA6NCW3 169 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 NCR2O95944 276 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 TSHBP01222 138 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 HLA-DQA1P01909 254 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 RPS10P46783 165 aaKnown RBP2.94□□□□□ -1.94
NUP54-206ENST00000508465 Q0VG73 95 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 SRSF9Q13242 221 aaKnown RBP eCLIP2.94□□□□□ -1.94
NUP54-206ENST00000508465 RIGQ13278 110 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 COTL1Q14019 142 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 FAM74A3Q4VXF1 159 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 TMEM97Q5BJF2 176 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 KRTAP26-1Q6PEX3 210 aa2.94□□□□□ -1.94
NUP54-206ENST00000508465 NOTCH2NLQ7Z3S9 236 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms