RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 A0A096LNJ9 63 aa12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 IGHV3-38A0A0C4DH36 116 aa12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 LINC01549A6NIU2 74 aa12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 FAM19A2Q8N3H0 131 aa12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 C10orf126Q8N4M7 172 aa12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 HIST1H2BLQ99880 126 aa12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 GTSF1LQ9H1H1 148 aa12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 PGPEP1Q9NXJ5 209 aa12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 APOBP04114 4563 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-209ENST00000504627 PMCHL1Q16048 86 aa12.17□□□□□ -0.46
SQSTM1-209ENST00000504627 ATP6V0E2Q8NHE4 81 aa12.17□□□□□ -0.46
SQSTM1-209ENST00000504627 KRTAP4-5Q9BYR2 181 aa12.17□□□□□ -0.46
SQSTM1-209ENST00000504627 TRAV8-6A0A0B4J262 113 aa12.16□□□□□ -0.46
SQSTM1-209ENST00000504627 IFITM10A6NMD0 228 aa12.16□□□□□ -0.46
SQSTM1-209ENST00000504627 TIRAPP58753 221 aa12.16□□□□□ -0.46
SQSTM1-209ENST00000504627 CYSLTR1Q9Y271 337 aa12.15□□□□□ -0.46
SQSTM1-209ENST00000504627 FABP4P15090 132 aa12.14□□□□□ -0.47
SQSTM1-209ENST00000504627 C2orf66Q6UXQ4 117 aa12.14□□□□□ -0.47
SQSTM1-209ENST00000504627 C20orf203Q8NBC4 194 aa12.14□□□□□ -0.47
SQSTM1-209ENST00000504627 TOMM6Q96B49 74 aa12.14□□□□□ -0.47
SQSTM1-209ENST00000504627 HSPB8Q9UJY1 196 aa12.14□□□□□ -0.47
SQSTM1-209ENST00000504627 TRBV25-1A0A075B6N4 114 aa12.13□□□□□ -0.47
SQSTM1-209ENST00000504627 A0A087WTM6 91 aa12.13□□□□□ -0.47
SQSTM1-209ENST00000504627 LEPROTL1O95214 131 aa12.13□□□□□ -0.47
SQSTM1-209ENST00000504627 FUSP35637 526 aaKnown RBP eCLIP12.13□□□□□ -0.474e-7■■■□□ 15.3
SQSTM1-209ENST00000504627 CDPF1Q6NVV7 123 aa12.13□□□□□ -0.47
SQSTM1-209ENST00000504627 NTM-AS1Q6ZSK4 140 aa12.13□□□□□ -0.47
SQSTM1-209ENST00000504627 CHCHD7Q9BUK0 85 aa12.13□□□□□ -0.47
SQSTM1-209ENST00000504627 TRBV6-8A0A0A6YYG3 113 aa12.12□□□□□ -0.47
SQSTM1-209ENST00000504627 PSCAO43653 123 aa12.12□□□□□ -0.47
SQSTM1-209ENST00000504627 LINC01556Q5JQF7 62 aa12.12□□□□□ -0.47
SQSTM1-209ENST00000504627 Q8N1X5 172 aa12.12□□□□□ -0.47
SQSTM1-209ENST00000504627 DEFB104AQ8WTQ1 72 aa12.12□□□□□ -0.47
SQSTM1-209ENST00000504627 TMEM243Q9BU79 118 aa12.12□□□□□ -0.47
SQSTM1-209ENST00000504627 ATP5LO75964 103 aa12.11□□□□□ -0.47
SQSTM1-209ENST00000504627 LELP1Q5T871 98 aa12.11□□□□□ -0.47
SQSTM1-209ENST00000504627 H7C423 109 aa12.1□□□□□ -0.47
SQSTM1-209ENST00000504627 SMAGPQ0VAQ4 97 aa12.1□□□□□ -0.47
SQSTM1-209ENST00000504627 LOC105371267A0A1B0GV96 52 aa12.09□□□□□ -0.47
SQSTM1-209ENST00000504627 IGHV3-30P01768 117 aa12.09□□□□□ -0.47
SQSTM1-209ENST00000504627 IGHV3-33P01772 117 aa12.09□□□□□ -0.47
SQSTM1-209ENST00000504627 IGHV3-30-3P0DP02 117 aa12.09□□□□□ -0.47
SQSTM1-209ENST00000504627 IGHV3-30-5P0DP03 117 aa12.09□□□□□ -0.47
SQSTM1-209ENST00000504627 RPL39P62891 51 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-209ENST00000504627 TIMM17AQ99595 171 aa12.09□□□□□ -0.47
SQSTM1-209ENST00000504627 Q9HAA7 133 aa12.09□□□□□ -0.47
SQSTM1-209ENST00000504627 IBA57-AS1B1ANH7 110 aa12.08□□□□□ -0.48
SQSTM1-209ENST00000504627 NPSP0C0P6 89 aa12.08□□□□□ -0.48
SQSTM1-209ENST00000504627 ERASQ7Z444 233 aa12.08□□□□□ -0.48
SQSTM1-209ENST00000504627 TIMM21Q9BVV7 248 aa12.08□□□□□ -0.48
SQSTM1-209ENST00000504627 SPANXA1Q9NS26 97 aa12.08□□□□□ -0.48
SQSTM1-209ENST00000504627 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-209ENST00000504627 IGKV2-29A2NJV5 120 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-209ENST00000504627 UBE2L6O14933 153 aa12.07□□□□□ -0.48
SQSTM1-209ENST00000504627 OR10D4PQ8NGN7 298 aa12.07□□□□□ -0.48
SQSTM1-209ENST00000504627 IFI27L1Q96BM0 104 aa12.07□□□□□ -0.48
SQSTM1-209ENST00000504627 TMEM141Q96I45 108 aa12.07□□□□□ -0.48
SQSTM1-209ENST00000504627 SCGB3A1Q96QR1 104 aa12.07□□□□□ -0.48
SQSTM1-209ENST00000504627 PYGO1Q9Y3Y4 419 aa12.07□□□□□ -0.48
SQSTM1-209ENST00000504627 IGIPA6NJ69 53 aa12.06□□□□□ -0.48
SQSTM1-209ENST00000504627 PKIAP61925 76 aa12.06□□□□□ -0.48
SQSTM1-209ENST00000504627 LINC00173Q6ZV60 143 aa12.06□□□□□ -0.48
SQSTM1-209ENST00000504627 MRPL52Q86TS9 123 aaKnown RBP12.06□□□□□ -0.48
SQSTM1-209ENST00000504627 MAP1LC3CQ9BXW4 147 aa12.06□□□□□ -0.48
SQSTM1-209ENST00000504627 UBE2D4Q9Y2X8 147 aa12.06□□□□□ -0.48
SQSTM1-209ENST00000504627 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.05□□□□□ -0.48
SQSTM1-209ENST00000504627 ZNF25P17030 456 aaPredicted RBP12.05□□□□□ -0.48
SQSTM1-209ENST00000504627 CHCHD5Q9BSY4 110 aa12.05□□□□□ -0.48
SQSTM1-209ENST00000504627 FGF6P10767 208 aa12.04□□□□□ -0.48
SQSTM1-209ENST00000504627 AKR1D1P51857 326 aa12.04□□□□□ -0.48
SQSTM1-209ENST00000504627 CSDC2Q9Y534 153 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-209ENST00000504627 C3orf79P0CE67 100 aa12.03□□□□□ -0.48
SQSTM1-209ENST00000504627 GCSHP23434 173 aa12.03□□□□□ -0.48
SQSTM1-209ENST00000504627 KRTDAPP60985 99 aa12.03□□□□□ -0.48
SQSTM1-209ENST00000504627 PAPPA-AS1Q5QFB9 102 aa12.03□□□□□ -0.48
SQSTM1-209ENST00000504627 Q6ZN92 141 aa12.03□□□□□ -0.48
SQSTM1-209ENST00000504627 SYS1-DBNDD2H3BUS1 97 aa12.02□□□□□ -0.49
SQSTM1-209ENST00000504627 KRTAP10-1P60331 282 aa12.02□□□□□ -0.49
SQSTM1-209ENST00000504627 MRPS36P82909 103 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-209ENST00000504627 AMMECR1LQ6DCA0 310 aa12.02□□□□□ -0.49
SQSTM1-209ENST00000504627 IGLV4-3A0A075B6K6 122 aa12.01□□□□□ -0.49
SQSTM1-209ENST00000504627 IGLV5-52A0A0A0MRZ9 124 aa12.01□□□□□ -0.49
SQSTM1-209ENST00000504627 EPM2AB3EWF7 344 aa12.01□□□□□ -0.49
SQSTM1-209ENST00000504627 GAGE6Q13070 117 aa12.01□□□□□ -0.49
SQSTM1-209ENST00000504627 PET117Q6UWS5 81 aa12.01□□□□□ -0.49
SQSTM1-209ENST00000504627 OR5A1Q8NGJ0 315 aa12.01□□□□□ -0.49
SQSTM1-209ENST00000504627 BAALCQ8WXS3 180 aa12.01□□□□□ -0.49
SQSTM1-209ENST00000504627 TM2D2Q9BX73 214 aa12.01□□□□□ -0.49
SQSTM1-209ENST00000504627 C20orf202A1L168 122 aa12□□□□□ -0.49
SQSTM1-209ENST00000504627 LRCOL1A6NCL2 159 aa12□□□□□ -0.49
SQSTM1-209ENST00000504627 XGP55808 180 aa12□□□□□ -0.49
SQSTM1-209ENST00000504627 DGAT2L7PQ6IED9 249 aa12□□□□□ -0.49
SQSTM1-209ENST00000504627 NTN5Q8WTR8 489 aaPredicted RBP12□□□□□ -0.49
SQSTM1-209ENST00000504627 TMEM101Q96IK0 257 aa12□□□□□ -0.49
SQSTM1-209ENST00000504627 TRAV12-1A0A0B4J245 112 aa11.99□□□□□ -0.49
SQSTM1-209ENST00000504627 A0A1B0GUV1 79 aa11.99□□□□□ -0.49
SQSTM1-209ENST00000504627 Q6ZUT4 128 aa11.99□□□□□ -0.49
SQSTM1-209ENST00000504627 Q8N3U1 123 aa11.99□□□□□ -0.49
SQSTM1-209ENST00000504627 Q8N814 137 aa11.99□□□□□ -0.49
SQSTM1-209ENST00000504627 TRAV8-3A0A0A6YYJ7 113 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms