RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 LINC00528Q8N1L1 170 aa15.92■□□□□ 0.14
UPF3A-209ENST00000492270 D6R8Y8 96 aa15.91■□□□□ 0.14
UPF3A-209ENST00000492270 S100A8P05109 93 aa15.91■□□□□ 0.14
UPF3A-209ENST00000492270 PNRC1Q12796 327 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-209ENST00000492270 CIRBP-AS1Q8TBR5 109 aa15.91■□□□□ 0.14
UPF3A-209ENST00000492270 TRBV24-1A0A075B6N3 115 aa15.9■□□□□ 0.14
UPF3A-209ENST00000492270 TNFRSF6BO95407 300 aa15.9■□□□□ 0.14
UPF3A-209ENST00000492270 SLPIP03973 132 aa15.9■□□□□ 0.14
UPF3A-209ENST00000492270 CNBPP62633 177 aaKnown RBP15.9■□□□□ 0.14
UPF3A-209ENST00000492270 KIR2DL4Q99706 377 aa15.9■□□□□ 0.14
UPF3A-209ENST00000492270 CDC42SE2Q9NRR3 84 aa15.9■□□□□ 0.14
UPF3A-209ENST00000492270 F8W036 122 aa15.89■□□□□ 0.13
UPF3A-209ENST00000492270 C20orf78Q9BR46 151 aa15.89■□□□□ 0.13
UPF3A-209ENST00000492270 LINC00959A0A1B0GUT2 108 aa15.88■□□□□ 0.13
UPF3A-209ENST00000492270 NPYP01303 97 aa15.88■□□□□ 0.13
UPF3A-209ENST00000492270 XCL1P47992 114 aa15.88■□□□□ 0.13
UPF3A-209ENST00000492270 FOXI1Q12951 378 aa15.88■□□□□ 0.13
UPF3A-209ENST00000492270 ATP5L2Q7Z4Y8 100 aa15.88■□□□□ 0.13
UPF3A-209ENST00000492270 CCL25O15444 150 aa15.87■□□□□ 0.13
UPF3A-209ENST00000492270 HIGD2BQ4VC39 106 aa15.87■□□□□ 0.13
UPF3A-209ENST00000492270 ZNF664Q8N3J9 261 aa15.87■□□□□ 0.13
UPF3A-209ENST00000492270 AP5S1Q9NUS5 200 aa15.87■□□□□ 0.13
UPF3A-209ENST00000492270 UBE2D4Q9Y2X8 147 aa15.87■□□□□ 0.13
UPF3A-209ENST00000492270 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP15.87■□□□□ 0.13
UPF3A-209ENST00000492270 PANO1I0J062 215 aa15.86■□□□□ 0.13
UPF3A-209ENST00000492270 MT-ND4LP03901 98 aa15.86■□□□□ 0.13
UPF3A-209ENST00000492270 RPL32P62910 135 aaKnown RBP15.86■□□□□ 0.13
UPF3A-209ENST00000492270 SDIM1Q6ZPB5 146 aa15.86■□□□□ 0.13
UPF3A-209ENST00000492270 ANAPC16Q96DE5 110 aa15.86■□□□□ 0.13
UPF3A-209ENST00000492270 SMIM2Q9BVW6 85 aa15.86■□□□□ 0.13
UPF3A-209ENST00000492270 ADCYAP1P18509 176 aa15.85■□□□□ 0.13
UPF3A-209ENST00000492270 RNASE13Q5GAN3 156 aaKnown RBP15.85■□□□□ 0.13
UPF3A-209ENST00000492270 FLG2Q5D862 2391 aaPredicted RBP15.85■□□□□ 0.13
UPF3A-209ENST00000492270 CFAP161Q6P656 301 aa15.84■□□□□ 0.13
UPF3A-209ENST00000492270 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.82■□□□□ 0.12
UPF3A-209ENST00000492270 PPBPP02775 128 aa15.82■□□□□ 0.12
UPF3A-209ENST00000492270 RPL39P62891 51 aaKnown RBP15.82■□□□□ 0.12
UPF3A-209ENST00000492270 SS18Q15532 418 aa15.82■□□□□ 0.12
UPF3A-209ENST00000492270 Q6ZUT4 128 aa15.82■□□□□ 0.12
UPF3A-209ENST00000492270 CSDC2Q9Y534 153 aaKnown RBP15.82■□□□□ 0.12
UPF3A-209ENST00000492270 PLA2G1BP04054 148 aaKnown RBP15.81■□□□□ 0.12
UPF3A-209ENST00000492270 TMEM136Q6ZRR5 245 aa15.81■□□□□ 0.12
UPF3A-209ENST00000492270 ORMDL3Q8N138 153 aa15.81■□□□□ 0.12
UPF3A-209ENST00000492270 IGHV3-64A0A075B6Q5 118 aa15.8■□□□□ 0.12
UPF3A-209ENST00000492270 GVQW2A0A096LPI5 108 aaPredicted RBP15.8■□□□□ 0.12
UPF3A-209ENST00000492270 PHOX2AO14813 284 aa15.8■□□□□ 0.12
UPF3A-209ENST00000492270 TCAPO15273 167 aa15.8■□□□□ 0.12
UPF3A-209ENST00000492270 PRELID3AQ96N28 172 aa15.8■□□□□ 0.12
UPF3A-209ENST00000492270 MYCBP2O75592 4640 aa15.8■□□□□ 0.12
UPF3A-209ENST00000492270 UQCC3Q6UW78 93 aa15.79■□□□□ 0.12
UPF3A-209ENST00000492270 TMEM218A2RU14 115 aa15.78■□□□□ 0.12
UPF3A-209ENST00000492270 CHTF8P0CG12 524 aa15.78■□□□□ 0.12
UPF3A-209ENST00000492270 SMAGPQ0VAQ4 97 aa15.78■□□□□ 0.12
UPF3A-209ENST00000492270 CD164L2Q6UWJ8 174 aa15.78■□□□□ 0.12
UPF3A-209ENST00000492270 TMEM18Q96B42 140 aa15.78■□□□□ 0.12
UPF3A-209ENST00000492270 TIMM21Q9BVV7 248 aa15.78■□□□□ 0.12
UPF3A-209ENST00000492270 KRTAP10-4P60372 401 aaPredicted RBP15.77■□□□□ 0.12
UPF3A-209ENST00000492270 LINC00526Q96FQ7 95 aa15.77■□□□□ 0.12
UPF3A-209ENST00000492270 CIRBPQ14011 172 aaKnown RBP15.76■□□□□ 0.11
UPF3A-209ENST00000492270 FAM104AQ969W3 186 aa15.76■□□□□ 0.11
UPF3A-209ENST00000492270 TRAV13-1A0A0B4J241 112 aa15.75■□□□□ 0.11
UPF3A-209ENST00000492270 IGHV1-58A0A0C4DH39 117 aa15.75■□□□□ 0.11
UPF3A-209ENST00000492270 OPRPNQ99935 248 aaPredicted RBP15.75■□□□□ 0.11
UPF3A-209ENST00000492270 C1orf196B1AJZ1 125 aa15.74■□□□□ 0.11
UPF3A-209ENST00000492270 COMMD7Q86VX2 200 aa15.73■□□□□ 0.11
UPF3A-209ENST00000492270 LOC389332A0A1B0GUA5 103 aa15.72■□□□□ 0.11
UPF3A-209ENST00000492270 COX6A2Q02221 97 aa15.72■□□□□ 0.11
UPF3A-209ENST00000492270 PRSS3P2Q8NHM4 247 aa15.71■□□□□ 0.11
UPF3A-209ENST00000492270 SPACA4Q8TDM5 124 aa15.71■□□□□ 0.11
UPF3A-209ENST00000492270 SPANXA1Q9NS26 97 aa15.71■□□□□ 0.11
UPF3A-209ENST00000492270 PRSS47A8MTI9 375 aa15.7■□□□□ 0.1
UPF3A-209ENST00000492270 RAB5AP20339 215 aa15.7■□□□□ 0.1
UPF3A-209ENST00000492270 IMMP2LQ96T52 175 aa15.7■□□□□ 0.1
UPF3A-209ENST00000492270 SEC11CQ9BY50 192 aa15.7■□□□□ 0.1
UPF3A-209ENST00000492270 MAP1LC3AQ9H492 121 aa15.7■□□□□ 0.1
UPF3A-209ENST00000492270 LAMTOR2Q9Y2Q5 125 aa15.7■□□□□ 0.1
UPF3A-209ENST00000492270 DMBT1Q9UGM3 2413 aaPredicted RBP15.69■□□□□ 0.1
UPF3A-209ENST00000492270 COX7A2LO14548 114 aa15.69■□□□□ 0.1
UPF3A-209ENST00000492270 A0A087WYN8 130 aa15.68■□□□□ 0.1
UPF3A-209ENST00000492270 MALP21145 153 aa15.68■□□□□ 0.1
UPF3A-209ENST00000492270 C5orf38Q86SI9 138 aa15.68■□□□□ 0.1
UPF3A-209ENST00000492270 CTDSP1Q9GZU7 261 aa15.68■□□□□ 0.1
UPF3A-209ENST00000492270 RPL37AP61513 92 aaKnown RBP15.67■□□□□ 0.1
UPF3A-209ENST00000492270 MRPS36P82909 103 aaKnown RBP15.67■□□□□ 0.1
UPF3A-209ENST00000492270 DPH3Q96FX2 82 aa15.67■□□□□ 0.1
UPF3A-209ENST00000492270 CARD19Q96LW7 228 aa15.67■□□□□ 0.1
UPF3A-209ENST00000492270 IGKV2-24A0A0C4DH68 120 aa15.66■□□□□ 0.1
UPF3A-209ENST00000492270 ZNF561-AS1K7EIQ3 104 aa15.66■□□□□ 0.1
UPF3A-209ENST00000492270 Q8N8P6 123 aa15.65■□□□□ 0.1
UPF3A-209ENST00000492270 PKHD1L1Q86WI1 4243 aa15.64■□□□□ 0.09
UPF3A-209ENST00000492270 IGLV4-69A0A075B6H9 119 aa15.64■□□□□ 0.09
UPF3A-209ENST00000492270 A0A096LNI7 61 aa15.64■□□□□ 0.09
UPF3A-209ENST00000492270 IFITM10A6NMD0 228 aa15.64■□□□□ 0.09
UPF3A-209ENST00000492270 IFI27P40305 119 aaPredicted RBP15.64■□□□□ 0.09
UPF3A-209ENST00000492270 SYCNQ0VAF6 134 aa15.64■□□□□ 0.09
UPF3A-209ENST00000492270 MAJINQ3KP22 176 aa15.63■□□□□ 0.09
UPF3A-209ENST00000492270 KIAA1644Q3SXP7 199 aa15.63■□□□□ 0.09
UPF3A-209ENST00000492270 IGLV4-3A0A075B6K6 122 aa15.62■□□□□ 0.09
UPF3A-209ENST00000492270 PYGO1Q9Y3Y4 419 aa15.62■□□□□ 0.09
UPF3A-209ENST00000492270 HERC1Q15751 4861 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 336.9 ms