RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 PPP1R2P9O14990 202 aa13.18□□□□□ -0.3
HDAC4-209ENST00000487617 CKS2P33552 79 aa13.18□□□□□ -0.3
HDAC4-209ENST00000487617 MRPL52Q86TS9 123 aaKnown RBP13.18□□□□□ -0.3
HDAC4-209ENST00000487617 KIR2DL4Q99706 377 aa13.18□□□□□ -0.3
HDAC4-209ENST00000487617 A0A1B0GXF2 115 aa13.17□□□□□ -0.3
HDAC4-209ENST00000487617 C15orf56Q8N910 161 aa13.17□□□□□ -0.3
HDAC4-209ENST00000487617 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-209ENST00000487617 LINC00959A0A1B0GUT2 108 aa13.16□□□□□ -0.3
HDAC4-209ENST00000487617 C20orf78Q9BR46 151 aa13.16□□□□□ -0.3
HDAC4-209ENST00000487617 CDC42SE2Q9NRR3 84 aa13.16□□□□□ -0.3
HDAC4-209ENST00000487617 SLPIP03973 132 aa13.15□□□□□ -0.3
HDAC4-209ENST00000487617 XCL1P47992 114 aa13.15□□□□□ -0.3
HDAC4-209ENST00000487617 FOXI1Q12951 378 aa13.15□□□□□ -0.3
HDAC4-209ENST00000487617 SDIM1Q6ZPB5 146 aa13.15□□□□□ -0.3
HDAC4-209ENST00000487617 ZNF664Q8N3J9 261 aa13.15□□□□□ -0.3
HDAC4-209ENST00000487617 TRBV24-1A0A075B6N3 115 aa13.14□□□□□ -0.31
HDAC4-209ENST00000487617 D6R8Y8 96 aa13.14□□□□□ -0.31
HDAC4-209ENST00000487617 CCL25O15444 150 aa13.14□□□□□ -0.31
HDAC4-209ENST00000487617 TNFRSF6BO95407 300 aa13.14□□□□□ -0.31
HDAC4-209ENST00000487617 PNRC1Q12796 327 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-209ENST00000487617 HIGD2BQ4VC39 106 aa13.14□□□□□ -0.31
HDAC4-209ENST00000487617 IGHV3-64A0A075B6Q5 118 aa13.13□□□□□ -0.31
HDAC4-209ENST00000487617 SMAGPQ0VAQ4 97 aa13.13□□□□□ -0.31
HDAC4-209ENST00000487617 SS18Q15532 418 aa13.13□□□□□ -0.31
HDAC4-209ENST00000487617 CLLU1Q5K131 121 aa13.13□□□□□ -0.31
HDAC4-209ENST00000487617 ATP5L2Q7Z4Y8 100 aa13.13□□□□□ -0.31
HDAC4-209ENST00000487617 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-209ENST00000487617 RPL32P62910 135 aaKnown RBP13.12□□□□□ -0.31
HDAC4-209ENST00000487617 SRRM2Q9UQ35 2752 aaKnown RBP13.11□□□□□ -0.31
HDAC4-209ENST00000487617 MT-ND4LP03901 98 aa13.11□□□□□ -0.31
HDAC4-209ENST00000487617 TMEM18Q96B42 140 aa13.11□□□□□ -0.31
HDAC4-209ENST00000487617 ANAPC16Q96DE5 110 aa13.11□□□□□ -0.31
HDAC4-209ENST00000487617 SMIM2Q9BVW6 85 aa13.11□□□□□ -0.31
HDAC4-209ENST00000487617 UBE2D4Q9Y2X8 147 aa13.11□□□□□ -0.31
HDAC4-209ENST00000487617 CSDC2Q9Y534 153 aaKnown RBP13.11□□□□□ -0.31
HDAC4-209ENST00000487617 PANO1I0J062 215 aa13.1□□□□□ -0.31
HDAC4-209ENST00000487617 TCAPO15273 167 aa13.1□□□□□ -0.31
HDAC4-209ENST00000487617 NPYP01303 97 aa13.1□□□□□ -0.31
HDAC4-209ENST00000487617 PPBPP02775 128 aa13.1□□□□□ -0.31
HDAC4-209ENST00000487617 VPS13BQ7Z7G8 4022 aa13.1□□□□□ -0.31
HDAC4-209ENST00000487617 FLG2Q5D862 2391 aaPredicted RBP13.09□□□□□ -0.31
HDAC4-209ENST00000487617 GVQW2A0A096LPI5 108 aaPredicted RBP13.09□□□□□ -0.31
HDAC4-209ENST00000487617 PHOX2AO14813 284 aa13.08□□□□□ -0.32
HDAC4-209ENST00000487617 RNASE13Q5GAN3 156 aaKnown RBP13.08□□□□□ -0.32
HDAC4-209ENST00000487617 CD164L2Q6UWJ8 174 aa13.08□□□□□ -0.32
HDAC4-209ENST00000487617 ORMDL3Q8N138 153 aa13.08□□□□□ -0.32
HDAC4-209ENST00000487617 IGHV1-58A0A0C4DH39 117 aa13.07□□□□□ -0.32
HDAC4-209ENST00000487617 TMEM136Q6ZRR5 245 aa13.07□□□□□ -0.32
HDAC4-209ENST00000487617 DPH3Q96FX2 82 aa13.07□□□□□ -0.32
HDAC4-209ENST00000487617 TIMM21Q9BVV7 248 aa13.07□□□□□ -0.32
HDAC4-209ENST00000487617 Q6ZUT4 128 aa13.06□□□□□ -0.32
HDAC4-209ENST00000487617 PRELID3AQ96N28 172 aa13.06□□□□□ -0.32
HDAC4-209ENST00000487617 TRAV13-1A0A0B4J241 112 aa13.05□□□□□ -0.32
HDAC4-209ENST00000487617 C1orf196B1AJZ1 125 aa13.05□□□□□ -0.32
HDAC4-209ENST00000487617 CHTF8P0CG12 524 aa13.05□□□□□ -0.32
HDAC4-209ENST00000487617 RPL39P62891 51 aaKnown RBP13.05□□□□□ -0.32
HDAC4-209ENST00000487617 IFITM2Q01629 132 aa13.05□□□□□ -0.32
HDAC4-209ENST00000487617 CIRBPQ14011 172 aaKnown RBP13.05□□□□□ -0.32
HDAC4-209ENST00000487617 KRTAP10-4P60372 401 aaPredicted RBP13.03□□□□□ -0.32
HDAC4-209ENST00000487617 RPL37AP61513 92 aaKnown RBP13.03□□□□□ -0.32
HDAC4-209ENST00000487617 COX6A2Q02221 97 aa13.03□□□□□ -0.32
HDAC4-209ENST00000487617 UQCC3Q6UW78 93 aa13.03□□□□□ -0.32
HDAC4-209ENST00000487617 LINC00526Q96FQ7 95 aa13.03□□□□□ -0.32
HDAC4-209ENST00000487617 RAB5AP20339 215 aa13.02□□□□□ -0.33
HDAC4-209ENST00000487617 SPACA4Q8TDM5 124 aa13.02□□□□□ -0.33
HDAC4-209ENST00000487617 SPANXA1Q9NS26 97 aa13.02□□□□□ -0.33
HDAC4-209ENST00000487617 ZNF561-AS1K7EIQ3 104 aa13.01□□□□□ -0.33
HDAC4-209ENST00000487617 COX7A2LO14548 114 aa13.01□□□□□ -0.33
HDAC4-209ENST00000487617 MALP21145 153 aa13.01□□□□□ -0.33
HDAC4-209ENST00000487617 PRSS3P2Q8NHM4 247 aa13.01□□□□□ -0.33
HDAC4-209ENST00000487617 A0A087WYN8 130 aa13□□□□□ -0.33
HDAC4-209ENST00000487617 TMEM218A2RU14 115 aa13□□□□□ -0.33
HDAC4-209ENST00000487617 ADCYAP1P18509 176 aa13□□□□□ -0.33
HDAC4-209ENST00000487617 LAMTOR2Q9Y2Q5 125 aa13□□□□□ -0.33
HDAC4-209ENST00000487617 DMBT1Q9UGM3 2413 aaPredicted RBP13□□□□□ -0.33
HDAC4-209ENST00000487617 LOC389332A0A1B0GUA5 103 aa12.99□□□□□ -0.33
HDAC4-209ENST00000487617 CARD19Q96LW7 228 aa12.99□□□□□ -0.33
HDAC4-209ENST00000487617 OPRPNQ99935 248 aaPredicted RBP12.99□□□□□ -0.33
HDAC4-209ENST00000487617 MAP1LC3AQ9H492 121 aa12.99□□□□□ -0.33
HDAC4-209ENST00000487617 IGKV2-24A0A0C4DH68 120 aa12.98□□□□□ -0.33
HDAC4-209ENST00000487617 MRPS36P82909 103 aaKnown RBP12.98□□□□□ -0.33
HDAC4-209ENST00000487617 C5orf38Q86SI9 138 aa12.98□□□□□ -0.33
HDAC4-209ENST00000487617 FAM104AQ969W3 186 aa12.98□□□□□ -0.33
HDAC4-209ENST00000487617 J3QL48 77 aa12.97□□□□□ -0.33
HDAC4-209ENST00000487617 SYCNQ0VAF6 134 aa12.97□□□□□ -0.33
HDAC4-209ENST00000487617 MAJINQ3KP22 176 aa12.97□□□□□ -0.33
HDAC4-209ENST00000487617 IMMP2LQ96T52 175 aa12.97□□□□□ -0.33
HDAC4-209ENST00000487617 MYCBP2O75592 4640 aa12.97□□□□□ -0.33
HDAC4-209ENST00000487617 PRSS47A8MTI9 375 aa12.96□□□□□ -0.33
HDAC4-209ENST00000487617 CTDSP1Q9GZU7 261 aa12.96□□□□□ -0.33
HDAC4-209ENST00000487617 PLAC8Q9NZF1 115 aa12.96□□□□□ -0.33
HDAC4-209ENST00000487617 IGLV4-69A0A075B6H9 119 aa12.95□□□□□ -0.34
HDAC4-209ENST00000487617 IFITM10A6NMD0 228 aa12.95□□□□□ -0.34
HDAC4-209ENST00000487617 IFI27P40305 119 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-209ENST00000487617 PKIGQ9Y2B9 76 aa12.95□□□□□ -0.34
HDAC4-209ENST00000487617 A0A096LNI7 61 aa12.94□□□□□ -0.34
HDAC4-209ENST00000487617 APOMO95445 188 aa12.94□□□□□ -0.34
HDAC4-209ENST00000487617 COMMD7Q86VX2 200 aa12.94□□□□□ -0.34
HDAC4-209ENST00000487617 Q8N8P6 123 aa12.94□□□□□ -0.34
HDAC4-209ENST00000487617 SEC11CQ9BY50 192 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms