RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 LENEPQ9Y5L5 61 aa2.48□□□□□ -2.01
PTCD3-216ENST00000487043 WNK1Q9H4A3 2382 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 FBN1P35555 2871 aaKnown RBP2.47□□□□□ -2.01
PTCD3-216ENST00000487043 TRAV9-1A0A075B6T8 112 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 IGHV6-1A0A0B4J1U7 121 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 A0A0J9YX75 114 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 C19orf71A6NCJ1 209 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 IZUMO1RA6ND01 250 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 FABP5P3A8MUU1 101 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 H7BYZ3 331 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 TYMSP04818 313 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 PFN1P07737 140 aaKnown RBP2.47□□□□□ -2.01
PTCD3-216ENST00000487043 MGST1P10620 155 aaKnown RBP2.47□□□□□ -2.01
PTCD3-216ENST00000487043 CRIP1P50238 77 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 DEFB131AP59861 70 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 PDZD11Q5EBL8 140 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 PSMG4Q5JS54 123 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 IBA57Q5T440 356 aaKnown RBP2.47□□□□□ -2.01
PTCD3-216ENST00000487043 EBLN2Q6P2I7 272 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 LINC00322Q6ZN03 302 aaPredicted RBP2.47□□□□□ -2.01
PTCD3-216ENST00000487043 FOXI2Q6ZQN5 318 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 SFRP2Q96HF1 295 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 URGCP-MRPS24S4R325 110 aa2.47□□□□□ -2.01
PTCD3-216ENST00000487043 COL6A5A8TX70 2615 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 IGKV2D-24A0A075B6R9 120 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 A8MTW9 85 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 OR11H12B2RN74 326 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 H3BMM0 161 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 GPX1P07203 203 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 PRB4P10163 310 aaPredicted RBP2.46□□□□□ -2.02
PTCD3-216ENST00000487043 HLA-DRB4P13762 266 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 ZNF80P51504 273 aaPredicted RBP2.46□□□□□ -2.02
PTCD3-216ENST00000487043 FOXA3P55318 350 aaPredicted RBP2.46□□□□□ -2.02
PTCD3-216ENST00000487043 DEFB1P60022 68 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 HIST1H1AQ02539 215 aaPredicted RBP2.46□□□□□ -2.02
PTCD3-216ENST00000487043 KRTAP13-3Q3SY46 172 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 FAM162BQ5T6X4 162 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 GDF5OSQ5U4N7 250 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 KRTAP5-2Q701N4 177 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 ZFAND2AQ8N6M9 145 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 OR4B1Q8NGF8 309 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 Q8TAT8 98 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 ZC2HC1AQ96GY0 325 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 ODF3Q96PU9 254 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 VAMP8Q9BV40 100 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 RNASE7Q9H1E1 156 aaKnown RBP2.46□□□□□ -2.02
PTCD3-216ENST00000487043 UQCR10Q9UDW1 63 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 PRO0628Q9UI54 55 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 TRAPPC1Q9Y5R8 145 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 V9GYV3 84 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 HLA-DRB4X5D2U9 266 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 STAB1Q9NY15 2570 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 VWFP04275 2813 aa2.46□□□□□ -2.02
PTCD3-216ENST00000487043 SORL1Q92673 2214 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 LOC102724200A0A096LPH7 203 aaPredicted RBP2.45□□□□□ -2.02
PTCD3-216ENST00000487043 TRAV21A0A0B4J279 112 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 SMIM27A0A1W2PRY6 76 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 TMEM189A5PLL7 270 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 KNCNA6PVL3 124 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 A8MWL6 223 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 SH2D1AO60880 128 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 ZNF324O75467 553 aaPredicted RBP2.45□□□□□ -2.02
PTCD3-216ENST00000487043 PPBPP02775 128 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 CD7P09564 240 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 ESDP10768 282 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 TSPOP30536 169 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 PMCHL1Q16048 86 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 Q6AWC8 147 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 AMTNQ6UX39 209 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 TSKUQ8WUA8 353 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 CHCHD7Q9BUK0 85 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 IL36BQ9NZH7 164 aa2.45□□□□□ -2.02
PTCD3-216ENST00000487043 MRPS16Q9Y3D3 137 aaKnown RBP2.45□□□□□ -2.02
PTCD3-216ENST00000487043 TRAV12-3A0A0B4J271 114 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 C7orf71A4D174 169 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 K7ERU9 68 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 CRXO43186 299 aaPredicted RBP2.44□□□□□ -2.02
PTCD3-216ENST00000487043 ORM1P02763 201 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 RNASE4P34096 147 aaKnown RBP2.44□□□□□ -2.02
PTCD3-216ENST00000487043 RBX1P62877 108 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 Q0VG73 95 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 SPINK13Q1W4C9 94 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 TDRG1Q3Y452 100 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 LUZP6Q538Z0 58 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 LCE3EQ5T5B0 92 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 PRR9Q5T870 116 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 MORN3Q6PF18 240 aaPredicted RBP2.44□□□□□ -2.02
PTCD3-216ENST00000487043 Q6ZQT7 251 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 SLC25A29Q8N8R3 303 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 NUP35Q8NFH5 326 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 BORCS7Q96B45 105 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 VPS25Q9BRG1 176 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 NAT8BQ9UHF3 227 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 LAMTOR2Q9Y2Q5 125 aa2.44□□□□□ -2.02
PTCD3-216ENST00000487043 TRAV12-2A0A075B6T6 113 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 TMSB15BA0A087X1C1 80 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 GRIFINA4D1Z8 144 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 HIGD1CA8MV81 97 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 F2Z2F3 143 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 M0R2Z0 102 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms