RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 IFI27P40305 119 aaPredicted RBP5.57□□□□□ -1.52
SF3A1-208ENST00000485618 REG3AQ06141 175 aa5.57□□□□□ -1.52
SF3A1-208ENST00000485618 C20orf203Q8NBC4 194 aa5.57□□□□□ -1.52
SF3A1-208ENST00000485618 ALKBH7Q9BT30 221 aaPredicted RBP5.57□□□□□ -1.52
SF3A1-208ENST00000485618 SPANXA1Q9NS26 97 aa5.57□□□□□ -1.52
SF3A1-208ENST00000485618 RTL8CO15255 209 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 SS18Q15532 418 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 C14orf177Q52M58 125 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 CFAP161Q6P656 301 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 Q6ZN92 141 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 CBLN2Q8IUK8 224 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 ZNF664Q8N3J9 261 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 DEFB104AQ8WTQ1 72 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 KRTAP1-5Q9BYS1 174 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 PRR34Q9NV39 138 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 CYSLTR1Q9Y271 337 aa5.56□□□□□ -1.52
SF3A1-208ENST00000485618 C1orf196B1AJZ1 125 aa5.55□□□□□ -1.52
SF3A1-208ENST00000485618 NPSP0C0P6 89 aa5.55□□□□□ -1.52
SF3A1-208ENST00000485618 PGPEP1Q9NXJ5 209 aa5.55□□□□□ -1.52
SF3A1-208ENST00000485618 PYGO1Q9Y3Y4 419 aa5.55□□□□□ -1.52
SF3A1-208ENST00000485618 IGLV4-60A0A075B6I1 120 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 LINC00614P0C842 121 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 MRPS36P82909 103 aaKnown RBP5.54□□□□□ -1.52
SF3A1-208ENST00000485618 ENHOQ6UWT2 76 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 YPEL4Q96NS1 127 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 C2orf88Q9BSF0 95 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 VCX2Q9H322 139 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 CDC42SE2Q9NRR3 84 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 AP5S1Q9NUS5 200 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 UBE2D4Q9Y2X8 147 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 PKHD1P08F94 4074 aa5.54□□□□□ -1.52
SF3A1-208ENST00000485618 IGKV3OR2-268A0A0C4DH90 116 aa5.53□□□□□ -1.52
SF3A1-208ENST00000485618 C2orf66Q6UXQ4 117 aa5.53□□□□□ -1.52
SF3A1-208ENST00000485618 Q6ZRN7 208 aaPredicted RBP5.53□□□□□ -1.52
SF3A1-208ENST00000485618 BAGE3Q86Y29 109 aa5.53□□□□□ -1.52
SF3A1-208ENST00000485618 Q8N3U1 123 aa5.53□□□□□ -1.52
SF3A1-208ENST00000485618 TMEM141Q96I45 108 aa5.53□□□□□ -1.52
SF3A1-208ENST00000485618 FAT2Q9NYQ8 4349 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 COLCA2A8K830 154 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 SEC11AP67812 179 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 TNP2Q05952 138 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 CDPF1Q6NVV7 123 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 CLPSL2Q6UWE3 100 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 TEX43Q6ZNM6 134 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 ERASQ7Z444 233 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 NTN5Q8WTR8 489 aaPredicted RBP5.52□□□□□ -1.53
SF3A1-208ENST00000485618 CHCHD1Q96BP2 118 aaKnown RBP5.52□□□□□ -1.53
SF3A1-208ENST00000485618 SCGB3A1Q96QR1 104 aa5.52□□□□□ -1.53
SF3A1-208ENST00000485618 A0A087WTM6 91 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 LINC00959A0A1B0GUT2 108 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 LINC01546A6NGU7 62 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 IFITM10A6NMD0 228 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 TRGC2P03986 189 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 RPL39P62891 51 aaKnown RBP5.51□□□□□ -1.53
SF3A1-208ENST00000485618 CD164L2Q6UWJ8 174 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 C18orf32Q8TCD1 76 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 CHCHD10Q8WYQ3 142 aaPredicted RBP5.51□□□□□ -1.53
SF3A1-208ENST00000485618 TOMM6Q96B49 74 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 TIMM17AQ99595 171 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 DNAH2Q9P225 4427 aa5.51□□□□□ -1.53
SF3A1-208ENST00000485618 IGLV10-54A0A075B6I4 117 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 TRAV13-1A0A0B4J241 112 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.5□□□□□ -1.53
SF3A1-208ENST00000485618 ATP6V1G1O75348 118 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 ATP5LO75964 103 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 APOMO95445 188 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 HBDP02042 147 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 MALP21145 153 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 XCL1P47992 114 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 BAALCQ8WXS3 180 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 KRTAP4-5Q9BYR2 181 aa5.5□□□□□ -1.53
SF3A1-208ENST00000485618 DYNC1H1Q14204 4646 aaKnown RBP5.5□□□□□ -1.53
SF3A1-208ENST00000485618 GAGE12HA6NDE8 117 aa5.49□□□□□ -1.53
SF3A1-208ENST00000485618 IGIPA6NJ69 53 aa5.49□□□□□ -1.53
SF3A1-208ENST00000485618 COX7A2LO14548 114 aa5.49□□□□□ -1.53
SF3A1-208ENST00000485618 HSBP1O75506 76 aa5.49□□□□□ -1.53
SF3A1-208ENST00000485618 SPATA12Q7Z6I5 190 aa5.49□□□□□ -1.53
SF3A1-208ENST00000485618 Q8N814 137 aa5.49□□□□□ -1.53
SF3A1-208ENST00000485618 DNAH11Q96DT5 4516 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 IGLV4-3A0A075B6K6 122 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 IGLV5-52A0A0A0MRZ9 124 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.48□□□□□ -1.53
SF3A1-208ENST00000485618 IGHV1-58A0A0C4DH39 117 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 LRCOL1A6NCL2 159 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 C16orf90A8MZG2 172 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 USP17L23D6RBM5 183 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 Q6ZUT4 128 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 GEMIN7Q9H840 131 aaKnown RBP5.48□□□□□ -1.53
SF3A1-208ENST00000485618 PKIGQ9Y2B9 76 aa5.48□□□□□ -1.53
SF3A1-208ENST00000485618 hDV102S1A0JD36 115 aa5.47□□□□□ -1.53
SF3A1-208ENST00000485618 SCO1O75880 301 aa5.47□□□□□ -1.53
SF3A1-208ENST00000485618 PMVKQ15126 192 aa5.47□□□□□ -1.53
SF3A1-208ENST00000485618 ZNF561-AS1K7EIQ3 104 aa5.46□□□□□ -1.54
SF3A1-208ENST00000485618 LECT2O14960 151 aa5.46□□□□□ -1.54
SF3A1-208ENST00000485618 PRSS1P07477 247 aa5.46□□□□□ -1.54
SF3A1-208ENST00000485618 NDUFA6P56556 154 aa5.46□□□□□ -1.54
SF3A1-208ENST00000485618 HERVK_113P63121 156 aa5.46□□□□□ -1.54
SF3A1-208ENST00000485618 FOXI1Q12951 378 aa5.46□□□□□ -1.54
SF3A1-208ENST00000485618 RNASE13Q5GAN3 156 aaKnown RBP5.46□□□□□ -1.54
SF3A1-208ENST00000485618 MAPKAPK5-AS1Q8N8E1 139 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms