RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 TNFRSF18Q9Y5U5 241 aa10.37□□□□□ -0.75
CHD3-211ENST00000481999 LOC107984156A0A0G2JMH3 177 aa10.37□□□□□ -0.75
CHD3-211ENST00000481999 A0A0J9YXV3 536 aa10.37□□□□□ -0.75
CHD3-211ENST00000481999 CRYBA4P53673 196 aa10.37□□□□□ -0.75
CHD3-211ENST00000481999 UBE2D3P61077 147 aa10.37□□□□□ -0.75
CHD3-211ENST00000481999 UBE2D2P62837 147 aa10.37□□□□□ -0.75
CHD3-211ENST00000481999 SH2D6Q7Z4S9 175 aa10.37□□□□□ -0.75
CHD3-211ENST00000481999 ARL17AQ8IVW1 177 aa10.37□□□□□ -0.75
CHD3-211ENST00000481999 COL6A5A8TX70 2615 aa10.36□□□□□ -0.75
CHD3-211ENST00000481999 CEMP1Q6PRD7 247 aaPredicted RBP10.36□□□□□ -0.75
CHD3-211ENST00000481999 CIDEAO60543 219 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 CFC1BP0CG36 223 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 CFC1P0CG37 223 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 MTURNQ8N3F0 131 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 CSNK1G2-AS1Q8NCQ2 148 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 CLUHP3Q96NS8 147 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 PLAC8L1A1L4L8 177 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 C10orf126Q8N4M7 172 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 LINC00467Q9BRT7 94 aa10.35□□□□□ -0.75
CHD3-211ENST00000481999 PRO1854Q9UHT4 67 aa10.34□□□□□ -0.75
CHD3-211ENST00000481999 PSMB2P49721 201 aa10.34□□□□□ -0.75
CHD3-211ENST00000481999 RNASE13Q5GAN3 156 aaKnown RBP10.34□□□□□ -0.75
CHD3-211ENST00000481999 IL17DQ8TAD2 202 aa10.34□□□□□ -0.75
CHD3-211ENST00000481999 CITED1Q99966 193 aa10.34□□□□□ -0.75
CHD3-211ENST00000481999 MRPS36P82909 103 aaKnown RBP10.33□□□□□ -0.76
CHD3-211ENST00000481999 SFTA2Q6UW10 78 aa10.33□□□□□ -0.76
CHD3-211ENST00000481999 TRBV20-1A0A075B6N2 111 aa10.33□□□□□ -0.76
CHD3-211ENST00000481999 IGHV3-64A0A075B6Q5 118 aa10.33□□□□□ -0.76
CHD3-211ENST00000481999 TMEM238C9JI98 176 aa10.33□□□□□ -0.76
CHD3-211ENST00000481999 TMEM263Q8WUH6 116 aaKnown RBP10.33□□□□□ -0.76
CHD3-211ENST00000481999 SPXQ9BT56 116 aa10.33□□□□□ -0.76
CHD3-211ENST00000481999 FAM104AQ969W3 186 aa10.32□□□□□ -0.76
CHD3-211ENST00000481999 SPANXA1Q9NS26 97 aa10.32□□□□□ -0.76
CHD3-211ENST00000481999 NOTCH1P46531 2555 aa10.32□□□□□ -0.76
CHD3-211ENST00000481999 GAGE7O76087 117 aa10.32□□□□□ -0.76
CHD3-211ENST00000481999 GAGE12FP0CL80 117 aa10.32□□□□□ -0.76
CHD3-211ENST00000481999 GAGE12GP0CL81 117 aa10.32□□□□□ -0.76
CHD3-211ENST00000481999 GAGE12IP0CL82 117 aa10.32□□□□□ -0.76
CHD3-211ENST00000481999 ATP6V0E2Q8NHE4 81 aa10.32□□□□□ -0.76
CHD3-211ENST00000481999 A4D1N5 150 aa10.31□□□□□ -0.76
CHD3-211ENST00000481999 GAGE12HA6NDE8 117 aa10.31□□□□□ -0.76
CHD3-211ENST00000481999 DNAJC30Q96LL9 226 aa10.31□□□□□ -0.76
CHD3-211ENST00000481999 TIMM21Q9BVV7 248 aa10.31□□□□□ -0.76
CHD3-211ENST00000481999 IGHV3-30-3P0DP02 117 aa10.31□□□□□ -0.76
CHD3-211ENST00000481999 C1QTNF4Q9BXJ3 329 aa10.31□□□□□ -0.76
CHD3-211ENST00000481999 CMYA5Q8N3K9 4069 aa10.31□□□□□ -0.76
CHD3-211ENST00000481999 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.3□□□□□ -0.76
CHD3-211ENST00000481999 IGKV2-29A2NJV5 120 aaPredicted RBP10.3□□□□□ -0.76
CHD3-211ENST00000481999 RS1O15537 224 aa10.3□□□□□ -0.76
CHD3-211ENST00000481999 SMCPP49901 116 aaPredicted RBP10.3□□□□□ -0.76
CHD3-211ENST00000481999 SIGMAR1Q99720 223 aa10.3□□□□□ -0.76
CHD3-211ENST00000481999 CHCHD7Q9BUK0 85 aa10.3□□□□□ -0.76
CHD3-211ENST00000481999 A0A0J9YXY3 114 aa10.3□□□□□ -0.76
CHD3-211ENST00000481999 FAM110AQ9BQ89 295 aa10.3□□□□□ -0.76
CHD3-211ENST00000481999 SPATA25Q9BR10 227 aa10.3□□□□□ -0.76
CHD3-211ENST00000481999 A0A0B4J2C4 111 aa10.29□□□□□ -0.76
CHD3-211ENST00000481999 LOC100131303A0A0U1RQF7 123 aa10.29□□□□□ -0.76
CHD3-211ENST00000481999 TCL1BO95988 128 aa10.29□□□□□ -0.76
CHD3-211ENST00000481999 KRTAP24-1Q3LI83 254 aa10.29□□□□□ -0.76
CHD3-211ENST00000481999 UBE2D4Q9Y2X8 147 aa10.29□□□□□ -0.76
CHD3-211ENST00000481999 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.29□□□□□ -0.76
CHD3-211ENST00000481999 TINCRA0A1B0GVN0 87 aa10.29□□□□□ -0.76
CHD3-211ENST00000481999 DEFB4AO15263 64 aa10.29□□□□□ -0.76
CHD3-211ENST00000481999 MUSTN1Q8IVN3 82 aa10.29□□□□□ -0.76
CHD3-211ENST00000481999 IGHV1-58A0A0C4DH39 117 aa10.28□□□□□ -0.76
CHD3-211ENST00000481999 SCGB1C2P0DMR2 95 aa10.28□□□□□ -0.76
CHD3-211ENST00000481999 TRGV2A0A075B6R0 118 aa10.28□□□□□ -0.76
CHD3-211ENST00000481999 INSL3P51460 131 aa10.28□□□□□ -0.76
CHD3-211ENST00000481999 FOXI1Q12951 378 aa10.28□□□□□ -0.76
CHD3-211ENST00000481999 IGHV3-33P01772 117 aa10.27□□□□□ -0.77
CHD3-211ENST00000481999 ERG28Q9UKR5 140 aa10.27□□□□□ -0.77
CHD3-211ENST00000481999 GTSF1LQ9H1H1 148 aa10.27□□□□□ -0.77
CHD3-211ENST00000481999 CMC4P56277 68 aaPredicted RBP10.26□□□□□ -0.77
CHD3-211ENST00000481999 C9orf66Q5T8R8 295 aa10.26□□□□□ -0.77
CHD3-211ENST00000481999 TRAV8-3A0A0A6YYJ7 113 aa10.26□□□□□ -0.77
CHD3-211ENST00000481999 EIF4EBP3O60516 100 aaPredicted RBP10.26□□□□□ -0.77
CHD3-211ENST00000481999 DEFB130BP0DP73 79 aa10.26□□□□□ -0.77
CHD3-211ENST00000481999 DEFB130AP0DP74 79 aa10.26□□□□□ -0.77
CHD3-211ENST00000481999 SCGB1A1P11684 91 aa10.26□□□□□ -0.77
CHD3-211ENST00000481999 DEFB135Q30KP9 77 aa10.26□□□□□ -0.77
CHD3-211ENST00000481999 C16orf74Q96GX8 76 aa10.26□□□□□ -0.77
CHD3-211ENST00000481999 VSIG2Q96IQ7 327 aa10.26□□□□□ -0.77
CHD3-211ENST00000481999 GAGE12JA6NER3 117 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 GAGE4Q13068 117 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 GAGE5Q13069 117 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 Q6ZUT4 128 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 SBSPONQ8IVN8 264 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 LITAFQ99732 161 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 NDUFA12Q9UI09 145 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 OXLD1Q5BKU9 147 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 TEN1Q86WV5 123 aa10.25□□□□□ -0.77
CHD3-211ENST00000481999 DAZ2Q13117 558 aaKnown RBP10.24□□□□□ -0.77
CHD3-211ENST00000481999 GEMIN7Q9H840 131 aaKnown RBP10.24□□□□□ -0.77
CHD3-211ENST00000481999 CFAP161Q6P656 301 aa10.24□□□□□ -0.77
CHD3-211ENST00000481999 PPDPFLQ8WWR9 84 aa10.24□□□□□ -0.77
CHD3-211ENST00000481999 NBEAL1Q6ZS30 2694 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 K7EQD1 137 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 LINC00694P0DN24 101 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 SPANXDQ9BXN6 97 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 SPANXCQ9NY87 97 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms