RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 TRAV8-6A0A0B4J262 113 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 TRAV26-2A0A0B4J265 109 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 HIGD1CA8MV81 97 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 H3BRM9 83 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 IGHV3-30P01768 117 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 IGHV3-33P01772 117 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 IGHV3-30-3P0DP02 117 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 IGHV3-30-5P0DP03 117 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 LINC01556Q5JQF7 62 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 BVES-AS1Q5T3Y7 98 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 AMMECR1LQ6DCA0 310 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 Q6ZRN7 208 aaPredicted RBP6.55□□□□□ -1.36
HDAC3-208ENST00000476739 TMEM191AQ9H0A3 160 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 HECTD4Q9Y4D8 3996 aa6.55□□□□□ -1.36
HDAC3-208ENST00000476739 NUPR1O60356 82 aa6.54□□□□□ -1.36
HDAC3-208ENST00000476739 GAS8-AS1O95177 125 aa6.54□□□□□ -1.36
HDAC3-208ENST00000476739 C3orf79P0CE67 100 aa6.54□□□□□ -1.36
HDAC3-208ENST00000476739 NUP35Q8NFH5 326 aa6.54□□□□□ -1.36
HDAC3-208ENST00000476739 GFRA4Q9GZZ7 299 aa6.54□□□□□ -1.36
HDAC3-208ENST00000476739 VCX2Q9H322 139 aa6.54□□□□□ -1.36
HDAC3-208ENST00000476739 FAM231BA6NCW3 169 aa6.53□□□□□ -1.36
HDAC3-208ENST00000476739 C9orf118A6NHY6 69 aa6.53□□□□□ -1.36
HDAC3-208ENST00000476739 NTM-AS1Q6ZSK4 140 aa6.53□□□□□ -1.36
HDAC3-208ENST00000476739 GATD1Q8NB37 220 aa6.53□□□□□ -1.36
HDAC3-208ENST00000476739 DEFB104AQ8WTQ1 72 aa6.53□□□□□ -1.36
HDAC3-208ENST00000476739 MRAP2Q96G30 205 aa6.53□□□□□ -1.36
HDAC3-208ENST00000476739 PKD1P98161 4303 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 A0A1B0GUT8 65 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 SMIM27A0A1W2PRY6 76 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 K7EP34 96 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 HSBP1O75506 76 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 CKS1BP61024 79 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 DAZ4Q86SG3 579 aaKnown RBP6.52□□□□□ -1.37
HDAC3-208ENST00000476739 RPL39LQ96EH5 51 aaKnown RBP6.52□□□□□ -1.37
HDAC3-208ENST00000476739 RNF185Q96GF1 192 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 DNAJC30Q96LL9 226 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 TMEM70Q9BUB7 260 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 DAZ3Q9NR90 486 aaKnown RBP6.52□□□□□ -1.37
HDAC3-208ENST00000476739 DNAH11Q96DT5 4516 aa6.52□□□□□ -1.37
HDAC3-208ENST00000476739 TRBV6-8A0A0A6YYG3 113 aa6.51□□□□□ -1.37
HDAC3-208ENST00000476739 IBA57-AS1B1ANH7 110 aa6.51□□□□□ -1.37
HDAC3-208ENST00000476739 H7C1H1 209 aa6.51□□□□□ -1.37
HDAC3-208ENST00000476739 LINC00310P59036 64 aa6.51□□□□□ -1.37
HDAC3-208ENST00000476739 HSD52Q0P140 79 aa6.51□□□□□ -1.37
HDAC3-208ENST00000476739 C18orf32Q8TCD1 76 aa6.51□□□□□ -1.37
HDAC3-208ENST00000476739 CHCHD1Q96BP2 118 aaKnown RBP6.51□□□□□ -1.37
HDAC3-208ENST00000476739 NAT8BQ9UHF3 227 aa6.51□□□□□ -1.37
HDAC3-208ENST00000476739 APCSP02743 223 aa6.5□□□□□ -1.37
HDAC3-208ENST00000476739 AMN1Q8IY45 258 aa6.5□□□□□ -1.37
HDAC3-208ENST00000476739 C10orf126Q8N4M7 172 aa6.5□□□□□ -1.37
HDAC3-208ENST00000476739 RIGQ13278 110 aa6.49□□□□□ -1.37
HDAC3-208ENST00000476739 MPV17L2Q567V2 206 aa6.49□□□□□ -1.37
HDAC3-208ENST00000476739 ERASQ7Z444 233 aa6.49□□□□□ -1.37
HDAC3-208ENST00000476739 Q9HAA7 133 aa6.49□□□□□ -1.37
HDAC3-208ENST00000476739 HSPB8Q9UJY1 196 aa6.49□□□□□ -1.37
HDAC3-208ENST00000476739 PKHD1P08F94 4074 aa6.49□□□□□ -1.37
HDAC3-208ENST00000476739 DYNC1H1Q14204 4646 aaKnown RBP6.48□□□□□ -1.37
HDAC3-208ENST00000476739 TMEM262E9PQX1 116 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 F8W1H4 67 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 SMKR1H3BMG3 65 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 FABP2P12104 132 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 FUSP35637 526 aaKnown RBP eCLIP6.48□□□□□ -1.37
HDAC3-208ENST00000476739 CAMPP49913 170 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 KRTAP10-2P60368 255 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 TMEM136Q6ZRR5 245 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 ATP5L2Q7Z4Y8 100 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 NFE4Q86UQ8 179 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 CHCHD5Q9BSY4 110 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 KLK12Q9UKR0 248 aa6.48□□□□□ -1.37
HDAC3-208ENST00000476739 TRBV25-1A0A075B6N4 114 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 A0A087WX48 190 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 A0A1B0GXF2 115 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 GAGE12HA6NDE8 117 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 NCR2O95944 276 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 RPL24P83731 157 aaKnown RBP6.47□□□□□ -1.37
HDAC3-208ENST00000476739 GAGE6Q13070 117 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 TMEM97Q5BJF2 176 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 SPATA12Q7Z6I5 190 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 MAP1LC3CQ9BXW4 147 aa6.47□□□□□ -1.37
HDAC3-208ENST00000476739 A0A087WTM6 91 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 IGHV1-24A0A0C4DH33 117 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 LRCOL1A6NCL2 159 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 SDHAF1A6NFY7 115 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 COX8AP10176 69 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 LAGE3Q14657 143 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 MRPL51Q4U2R6 128 aaKnown RBP6.46□□□□□ -1.38
HDAC3-208ENST00000476739 FAM104BQ5XKR9 115 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 MAPKAPK5-AS1Q8N8E1 139 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 DNAH5Q8TE73 4624 aa6.46□□□□□ -1.38
HDAC3-208ENST00000476739 TRBV6-5A0A0K0K1A5 114 aa6.45□□□□□ -1.38
HDAC3-208ENST00000476739 TSPAN13O95857 204 aa6.45□□□□□ -1.38
HDAC3-208ENST00000476739 WFDC2Q14508 124 aa6.45□□□□□ -1.38
HDAC3-208ENST00000476739 ENHOQ6UWT2 76 aa6.45□□□□□ -1.38
HDAC3-208ENST00000476739 NRACQ8N912 160 aa6.45□□□□□ -1.38
HDAC3-208ENST00000476739 UBE2WQ96B02 151 aa6.45□□□□□ -1.38
HDAC3-208ENST00000476739 CHCHD7Q9BUK0 85 aa6.45□□□□□ -1.38
HDAC3-208ENST00000476739 GEMIN7Q9H840 131 aaKnown RBP6.45□□□□□ -1.38
HDAC3-208ENST00000476739 CYSLTR1Q9Y271 337 aa6.45□□□□□ -1.38
HDAC3-208ENST00000476739 IGLV4-60A0A075B6I1 120 aa6.44□□□□□ -1.38
HDAC3-208ENST00000476739 TRAV8-3A0A0A6YYJ7 113 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms