RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	MRPL51	Q4U2R6	128 aa	Known RBP	7.52	□□□□□ -1.21
CPNE1-222	ENST00000473373	FAM104B	Q5XKR9	115 aa		7.52	□□□□□ -1.21
CPNE1-222	ENST00000473373	TMEM18	Q96B42	140 aa		7.52	□□□□□ -1.21
CPNE1-222	ENST00000473373	DMBT1	Q9UGM3	2413 aa	Predicted RBP	7.51	□□□□□ -1.21
CPNE1-222	ENST00000473373	MT-ND4L	P03901	98 aa		7.51	□□□□□ -1.21
CPNE1-222	ENST00000473373	PNRC1	Q12796	327 aa	Predicted RBP	7.51	□□□□□ -1.21
CPNE1-222	ENST00000473373	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	7.51	□□□□□ -1.21
CPNE1-222	ENST00000473373	TRBV27	A0A0K0K1C4	114 aa		7.5	□□□□□ -1.21
CPNE1-222	ENST00000473373	LINC00862	A6NCI5	91 aa		7.5	□□□□□ -1.21
CPNE1-222	ENST00000473373	XCL1	P47992	114 aa		7.5	□□□□□ -1.21
CPNE1-222	ENST00000473373	POLR2K	P53803	58 aa	Known RBP	7.5	□□□□□ -1.21
CPNE1-222	ENST00000473373	HIGD2B	Q4VC39	106 aa		7.5	□□□□□ -1.21
CPNE1-222	ENST00000473373	SCX	Q7RTU7	201 aa		7.5	□□□□□ -1.21
CPNE1-222	ENST00000473373	FAT1	Q14517	4588 aa		7.5	□□□□□ -1.21
CPNE1-222	ENST00000473373		D6R8Y8	96 aa		7.49	□□□□□ -1.21
CPNE1-222	ENST00000473373	TCAP	O15273	167 aa		7.49	□□□□□ -1.21
CPNE1-222	ENST00000473373	KRTAP26-1	Q6PEX3	210 aa		7.49	□□□□□ -1.21
CPNE1-222	ENST00000473373	ANAPC16	Q96DE5	110 aa		7.49	□□□□□ -1.21
CPNE1-222	ENST00000473373	CHAC1	Q9BUX1	264 aa		7.49	□□□□□ -1.21
CPNE1-222	ENST00000473373	IGHV3-64	A0A075B6Q5	118 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	CCL25	O15444	150 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	TNFRSF6B	O95407	300 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	ESD	P10768	282 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373		Q6ZSA8	131 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	ATP5L2	Q7Z4Y8	100 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	ZNF664	Q8N3J9	261 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	NRAC	Q8N912	160 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	C9orf163	Q8N9P6	203 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	C20orf78	Q9BR46	151 aa		7.48	□□□□□ -1.21
CPNE1-222	ENST00000473373	LINC00959	A0A1B0GUT2	108 aa		7.47	□□□□□ -1.21
CPNE1-222	ENST00000473373	PPBP	P02775	128 aa		7.47	□□□□□ -1.21
CPNE1-222	ENST00000473373	RAB5A	P20339	215 aa		7.47	□□□□□ -1.21
CPNE1-222	ENST00000473373	MAL	P21145	153 aa		7.47	□□□□□ -1.21
CPNE1-222	ENST00000473373	RNASE13	Q5GAN3	156 aa	Known RBP	7.47	□□□□□ -1.21
CPNE1-222	ENST00000473373	CLLU1	Q5K131	121 aa		7.47	□□□□□ -1.21
CPNE1-222	ENST00000473373	ORMDL3	Q8N138	153 aa		7.47	□□□□□ -1.21
CPNE1-222	ENST00000473373	CIRBP-AS1	Q8TBR5	109 aa		7.47	□□□□□ -1.21
CPNE1-222	ENST00000473373	SMIM2	Q9BVW6	85 aa		7.46	□□□□□ -1.22
CPNE1-222	ENST00000473373	MYCBP2	O75592	4640 aa		7.46	□□□□□ -1.22
CPNE1-222	ENST00000473373	TRAV13-1	A0A0B4J241	112 aa		7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	ZNF561-AS1	K7EIQ3	104 aa		7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	NPY	P01303	97 aa		7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	CNBP	P62633	177 aa	Known RBP	7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	TMEM136	Q6ZRR5	245 aa		7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	MRPL52	Q86TS9	123 aa	Known RBP	7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	C15orf56	Q8N910	161 aa		7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	PRELID3A	Q96N28	172 aa		7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	CDC42SE2	Q9NRR3	84 aa		7.45	□□□□□ -1.22
CPNE1-222	ENST00000473373	SRRM2	Q9UQ35	2752 aa	Known RBP	7.44	□□□□□ -1.22
CPNE1-222	ENST00000473373	IGHV1-58	A0A0C4DH39	117 aa		7.44	□□□□□ -1.22
CPNE1-222	ENST00000473373	LOC389332	A0A1B0GUA5	103 aa		7.44	□□□□□ -1.22
CPNE1-222	ENST00000473373		A0A1B0GXF2	115 aa		7.44	□□□□□ -1.22
CPNE1-222	ENST00000473373	C1orf196	B1AJZ1	125 aa		7.44	□□□□□ -1.22
CPNE1-222	ENST00000473373	MAP1LC3A	Q9H492	121 aa		7.44	□□□□□ -1.22
CPNE1-222	ENST00000473373	UBE2D4	Q9Y2X8	147 aa		7.44	□□□□□ -1.22
CPNE1-222	ENST00000473373	VPS13B	Q7Z7G8	4022 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	TRBV24-1	A0A075B6N3	115 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	PHOX2A	O14813	284 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	RPL39	P62891	51 aa	Known RBP	7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	FOXI1	Q12951	378 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	UQCC3	Q6UW78	93 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	CD164L2	Q6UWJ8	174 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373		Q6ZUT4	128 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	CTDSP1	Q9GZU7	261 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	PKIG	Q9Y2B9	76 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	UBR4	Q5T4S7	5183 aa		7.43	□□□□□ -1.22
CPNE1-222	ENST00000473373	IGKV2-24	A0A0C4DH68	120 aa		7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	COX7A2L	O14548	114 aa		7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	APOM	O95445	188 aa		7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	S100P	P25815	95 aa		7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	IFI27	P40305	119 aa	Predicted RBP	7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	RPL37A	P61513	92 aa	Known RBP	7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	RPL32	P62910	135 aa	Known RBP	7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	LCE2C	Q5TA81	110 aa		7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	CSDC2	Q9Y534	153 aa	Known RBP	7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	7.42	□□□□□ -1.22
CPNE1-222	ENST00000473373	GVQW2	A0A096LPI5	108 aa	Predicted RBP	7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	COX6A2	Q02221	97 aa		7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	MAJIN	Q3KP22	176 aa		7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	SDIM1	Q6ZPB5	146 aa		7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	COMMD7	Q86VX2	200 aa		7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	LINC00526	Q96FQ7	95 aa		7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	CARD19	Q96LW7	228 aa		7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	TIMM21	Q9BVV7	248 aa		7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	SPANXA1	Q9NS26	97 aa		7.41	□□□□□ -1.22
CPNE1-222	ENST00000473373	IFITM10	A6NMD0	228 aa		7.4	□□□□□ -1.22
CPNE1-222	ENST00000473373	CHTF8	P0CG12	524 aa		7.4	□□□□□ -1.22
CPNE1-222	ENST00000473373	C5orf38	Q86SI9	138 aa		7.4	□□□□□ -1.22
CPNE1-222	ENST00000473373	LAMTOR2	Q9Y2Q5	125 aa		7.4	□□□□□ -1.22
CPNE1-222	ENST00000473373	FLG2	Q5D862	2391 aa	Predicted RBP	7.39	□□□□□ -1.23
CPNE1-222	ENST00000473373	TMEM218	A2RU14	115 aa		7.39	□□□□□ -1.23
CPNE1-222	ENST00000473373	SLPI	P03973	132 aa		7.39	□□□□□ -1.23
CPNE1-222	ENST00000473373		Q6ZN92	141 aa		7.39	□□□□□ -1.23
CPNE1-222	ENST00000473373	TGIF2-C20orf24	A0A0A6YYL0	155 aa		7.38	□□□□□ -1.23
CPNE1-222	ENST00000473373	IFITM2	Q01629	132 aa		7.38	□□□□□ -1.23
CPNE1-222	ENST00000473373	SYCN	Q0VAF6	134 aa		7.38	□□□□□ -1.23
CPNE1-222	ENST00000473373	PRSS3P2	Q8NHM4	247 aa		7.38	□□□□□ -1.23
CPNE1-222	ENST00000473373	C7orf33	Q8WU49	177 aa		7.38	□□□□□ -1.23
CPNE1-222	ENST00000473373	CAMK2N2	Q96S95	79 aa		7.38	□□□□□ -1.23
CPNE1-222	ENST00000473373	C2orf88	Q9BSF0	95 aa		7.38	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms