RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 KLK9Q2XQG4 91 aa9.92□□□□□ -0.82
CCDC88A-211ENST00000471947 WFDC2Q14508 124 aa9.92□□□□□ -0.82
CCDC88A-211ENST00000471947 PTH2Q96A98 100 aa9.92□□□□□ -0.82
CCDC88A-211ENST00000471947 XCL1P47992 114 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 TMEM101Q96IK0 257 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 TRBV7-9A0A0J9YWB2 115 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 TMEM238LA0A1B0GVL6 79 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 A4D1N5 150 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 A6NJY4 79 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 E9PLD3 99 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 PRIMA1Q86XR5 153 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 IGLV4-69A0A075B6H9 119 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 TRBV7-3A0A075B6L6 115 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 RHODO00212 210 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 GYPEP15421 78 aa9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 ZNF22P17026 224 aaPredicted RBP9.91□□□□□ -0.82
CCDC88A-211ENST00000471947 MUSTN1Q8IVN3 82 aa9.9□□□□□ -0.82
CCDC88A-211ENST00000471947 BRI3O95415 125 aa9.9□□□□□ -0.82
CCDC88A-211ENST00000471947 IGHV3-30-3P0DP02 117 aa9.9□□□□□ -0.82
CCDC88A-211ENST00000471947 IGLL5B9A064 214 aa9.9□□□□□ -0.83
CCDC88A-211ENST00000471947 K7EQD1 137 aa9.9□□□□□ -0.83
CCDC88A-211ENST00000471947 NXPH4O95158 308 aa9.89□□□□□ -0.83
CCDC88A-211ENST00000471947 KRTAP10-3P60369 221 aa9.89□□□□□ -0.83
CCDC88A-211ENST00000471947 TMEM86BQ8N661 226 aa9.89□□□□□ -0.83
CCDC88A-211ENST00000471947 C3orf56Q8N813 242 aa9.89□□□□□ -0.83
CCDC88A-211ENST00000471947 TRAV12-1A0A0B4J245 112 aa9.89□□□□□ -0.83
CCDC88A-211ENST00000471947 Q9H8V8 135 aa9.89□□□□□ -0.83
CCDC88A-211ENST00000471947 OR13C6PQ8NH95 151 aa9.89□□□□□ -0.83
CCDC88A-211ENST00000471947 K7ERU9 68 aa9.88□□□□□ -0.83
CCDC88A-211ENST00000471947 MRPL52Q86TS9 123 aaKnown RBP9.88□□□□□ -0.83
CCDC88A-211ENST00000471947 OCIAD2Q56VL3 154 aa9.88□□□□□ -0.83
CCDC88A-211ENST00000471947 DEFB121Q5J5C9 76 aa9.88□□□□□ -0.83
CCDC88A-211ENST00000471947 FAM222AQ5U5X8 452 aa9.88□□□□□ -0.83
CCDC88A-211ENST00000471947 TMEM263Q8WUH6 116 aaKnown RBP9.88□□□□□ -0.83
CCDC88A-211ENST00000471947 C1QTNF4Q9BXJ3 329 aa9.88□□□□□ -0.83
CCDC88A-211ENST00000471947 RHOHQ15669 191 aa9.87□□□□□ -0.83
CCDC88A-211ENST00000471947 ODF3Q96PU9 254 aa9.87□□□□□ -0.83
CCDC88A-211ENST00000471947 TIMM17AQ99595 171 aa9.87□□□□□ -0.83
CCDC88A-211ENST00000471947 LINC00526Q96FQ7 95 aa9.87□□□□□ -0.83
CCDC88A-211ENST00000471947 TMEM243Q9BU79 118 aa9.87□□□□□ -0.83
CCDC88A-211ENST00000471947 Q8N2B8 174 aa9.87□□□□□ -0.83
CCDC88A-211ENST00000471947 C11orf72Q8NBR9 251 aa9.87□□□□□ -0.83
CCDC88A-211ENST00000471947 K7EP34 96 aa9.86□□□□□ -0.83
CCDC88A-211ENST00000471947 LINC00158P58513 81 aa9.86□□□□□ -0.83
CCDC88A-211ENST00000471947 RETNQ9HD89 108 aa9.86□□□□□ -0.83
CCDC88A-211ENST00000471947 ZMAT4Q9H898 229 aa9.86□□□□□ -0.83
CCDC88A-211ENST00000471947 TRRAPQ9Y4A5 3859 aa9.86□□□□□ -0.83
CCDC88A-211ENST00000471947 TEX48A0A1B0GUV7 120 aa9.86□□□□□ -0.83
CCDC88A-211ENST00000471947 COX6A2Q02221 97 aa9.86□□□□□ -0.83
CCDC88A-211ENST00000471947 DAD1P61803 113 aa9.85□□□□□ -0.83
CCDC88A-211ENST00000471947 IGLV1-51P01701 117 aa9.85□□□□□ -0.83
CCDC88A-211ENST00000471947 RNF152Q8N8N0 203 aa9.85□□□□□ -0.83
CCDC88A-211ENST00000471947 SIVA1O15304 175 aa9.84□□□□□ -0.83
CCDC88A-211ENST00000471947 PAX4O43316 350 aa9.84□□□□□ -0.83
CCDC88A-211ENST00000471947 ERG28Q9UKR5 140 aa9.84□□□□□ -0.83
CCDC88A-211ENST00000471947 Q8N3U1 123 aa9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 CBY1Q9Y3M2 126 aa9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 C9JAW5 83 aa9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 TRBV6-5A0A0K0K1A5 114 aa9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 ANGP03950 147 aaKnown RBP9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 NFE4Q86UQ8 179 aa9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 CHCHD7Q9BUK0 85 aa9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 GTSF1LQ9H1H1 148 aa9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 KMT2BQ9UMN6 2715 aaPredicted RBP9.83□□□□□ -0.84
CCDC88A-211ENST00000471947 VSIG2Q96IQ7 327 aa9.82□□□□□ -0.84
CCDC88A-211ENST00000471947 UBE2D4Q9Y2X8 147 aa9.82□□□□□ -0.84
CCDC88A-211ENST00000471947 TRAV25A0A0B4J276 109 aa9.82□□□□□ -0.84
CCDC88A-211ENST00000471947 TMEM238C9JI98 176 aa9.82□□□□□ -0.84
CCDC88A-211ENST00000471947 C10orf126Q8N4M7 172 aa9.82□□□□□ -0.84
CCDC88A-211ENST00000471947 C16orf74Q96GX8 76 aa9.82□□□□□ -0.84
CCDC88A-211ENST00000471947 TRAV26-1A0A087WT03 109 aa9.81□□□□□ -0.84
CCDC88A-211ENST00000471947 CIRBPQ14011 172 aaKnown RBP9.81□□□□□ -0.84
CCDC88A-211ENST00000471947 C6orf226Q5I0X4 101 aa9.81□□□□□ -0.84
CCDC88A-211ENST00000471947 IGLV4-60A0A075B6I1 120 aa9.81□□□□□ -0.84
CCDC88A-211ENST00000471947 A0A0J9YXY3 114 aa9.81□□□□□ -0.84
CCDC88A-211ENST00000471947 TMEM223A0PJW6 202 aa9.81□□□□□ -0.84
CCDC88A-211ENST00000471947 RS1O15537 224 aa9.81□□□□□ -0.84
CCDC88A-211ENST00000471947 NTM-AS1Q6ZSK4 140 aa9.81□□□□□ -0.84
CCDC88A-211ENST00000471947 PIK3CD-AS1Q5SR53 167 aa9.8□□□□□ -0.84
CCDC88A-211ENST00000471947 LEPROTO15243 131 aa9.8□□□□□ -0.84
CCDC88A-211ENST00000471947 INSL3P51460 131 aa9.8□□□□□ -0.84
CCDC88A-211ENST00000471947 FHL3Q13643 280 aa9.8□□□□□ -0.84
CCDC88A-211ENST00000471947 PRO1854Q9UHT4 67 aa9.8□□□□□ -0.84
CCDC88A-211ENST00000471947 SMAGPQ0VAQ4 97 aa9.8□□□□□ -0.84
CCDC88A-211ENST00000471947 ADAMTSL4-AS1Q5T5F5 129 aa9.8□□□□□ -0.84
CCDC88A-211ENST00000471947 TSPAN13O95857 204 aa9.79□□□□□ -0.84
CCDC88A-211ENST00000471947 IGHV3-30P01768 117 aa9.79□□□□□ -0.84
CCDC88A-211ENST00000471947 IGHV3-33P01772 117 aa9.79□□□□□ -0.84
CCDC88A-211ENST00000471947 IGHV3-30-5P0DP03 117 aa9.79□□□□□ -0.84
CCDC88A-211ENST00000471947 ATP6V0E2Q8NHE4 81 aa9.79□□□□□ -0.84
CCDC88A-211ENST00000471947 HIGD1BQ9P298 99 aa9.79□□□□□ -0.84
CCDC88A-211ENST00000471947 GIG44P09565 113 aaPredicted RBP9.79□□□□□ -0.84
CCDC88A-211ENST00000471947 CLEC2BQ92478 149 aa9.79□□□□□ -0.84
CCDC88A-211ENST00000471947 CFC1BP0CG36 223 aa9.78□□□□□ -0.84
CCDC88A-211ENST00000471947 CFC1P0CG37 223 aa9.78□□□□□ -0.84
CCDC88A-211ENST00000471947 TRAV4A0A0B4J268 109 aa9.78□□□□□ -0.84
CCDC88A-211ENST00000471947 NDUFA11Q86Y39 141 aa9.78□□□□□ -0.84
CCDC88A-211ENST00000471947 TM2D2Q9BX73 214 aa9.78□□□□□ -0.84
CCDC88A-211ENST00000471947 PRSS47A8MTI9 375 aa9.78□□□□□ -0.84
CCDC88A-211ENST00000471947 MALP21145 153 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 131.1 ms