RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 EPPK1P58107 5090 aaKnown RBP7.95□□□□□ -1.14
VPS13D-204ENST00000469054 A0A087WTM6 91 aa7.95□□□□□ -1.14
VPS13D-204ENST00000469054 SMAGPQ0VAQ4 97 aa7.95□□□□□ -1.14
VPS13D-204ENST00000469054 ALKBH7Q9BT30 221 aaPredicted RBP7.95□□□□□ -1.14
VPS13D-204ENST00000469054 C1orf43Q9BWL3 253 aa7.95□□□□□ -1.14
VPS13D-204ENST00000469054 NXT2Q9NPJ8 142 aaKnown RBP7.95□□□□□ -1.14
VPS13D-204ENST00000469054 DNAH11Q96DT5 4516 aa7.94□□□□□ -1.14
VPS13D-204ENST00000469054 TRAV8-4A0A0B4J246 113 aa7.94□□□□□ -1.14
VPS13D-204ENST00000469054 EREGO14944 169 aa7.94□□□□□ -1.14
VPS13D-204ENST00000469054 DGAT2L7PQ6IED9 249 aa7.94□□□□□ -1.14
VPS13D-204ENST00000469054 MAPKAPK5-AS1Q8N8E1 139 aa7.94□□□□□ -1.14
VPS13D-204ENST00000469054 OR5A1Q8NGJ0 315 aa7.94□□□□□ -1.14
VPS13D-204ENST00000469054 UBE2D4Q9Y2X8 147 aa7.94□□□□□ -1.14
VPS13D-204ENST00000469054 CSDC2Q9Y534 153 aaKnown RBP7.94□□□□□ -1.14
VPS13D-204ENST00000469054 LRCOL1A6NCL2 159 aa7.93□□□□□ -1.14
VPS13D-204ENST00000469054 K7EMI3 77 aa7.93□□□□□ -1.14
VPS13D-204ENST00000469054 IFI27P40305 119 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-204ENST00000469054 RPL39P62891 51 aaKnown RBP7.93□□□□□ -1.14
VPS13D-204ENST00000469054 TIMM21Q9BVV7 248 aa7.93□□□□□ -1.14
VPS13D-204ENST00000469054 CDC42SE2Q9NRR3 84 aa7.93□□□□□ -1.14
VPS13D-204ENST00000469054 IGLV10-54A0A075B6I4 117 aa7.92□□□□□ -1.14
VPS13D-204ENST00000469054 IGKV3OR2-268A0A0C4DH90 116 aa7.92□□□□□ -1.14
VPS13D-204ENST00000469054 ORMDL2Q53FV1 153 aa7.92□□□□□ -1.14
VPS13D-204ENST00000469054 ZNF664Q8N3J9 261 aa7.92□□□□□ -1.14
VPS13D-204ENST00000469054 PRSS3P2Q8NHM4 247 aa7.92□□□□□ -1.14
VPS13D-204ENST00000469054 KRTAP26-1Q6PEX3 210 aa7.91□□□□□ -1.14
VPS13D-204ENST00000469054 SPATA12Q7Z6I5 190 aa7.91□□□□□ -1.14
VPS13D-204ENST00000469054 BAALCQ8WXS3 180 aa7.91□□□□□ -1.14
VPS13D-204ENST00000469054 DYNC1H1Q14204 4646 aaKnown RBP7.91□□□□□ -1.14
VPS13D-204ENST00000469054 PKD1P98161 4303 aa7.9□□□□□ -1.14
VPS13D-204ENST00000469054 KRTAP10-2P60368 255 aa7.9□□□□□ -1.14
VPS13D-204ENST00000469054 WFDC2Q14508 124 aa7.9□□□□□ -1.14
VPS13D-204ENST00000469054 SPANXA1Q9NS26 97 aa7.9□□□□□ -1.14
VPS13D-204ENST00000469054 LECT2O14960 151 aa7.89□□□□□ -1.15
VPS13D-204ENST00000469054 C2orf66Q6UXQ4 117 aa7.89□□□□□ -1.15
VPS13D-204ENST00000469054 Q6ZUT4 128 aa7.89□□□□□ -1.15
VPS13D-204ENST00000469054 Q8N814 137 aa7.89□□□□□ -1.15
VPS13D-204ENST00000469054 CHCHD10Q8WYQ3 142 aaPredicted RBP7.89□□□□□ -1.15
VPS13D-204ENST00000469054 CYSLTR1Q9Y271 337 aa7.89□□□□□ -1.15
VPS13D-204ENST00000469054 PYGO1Q9Y3Y4 419 aa7.89□□□□□ -1.15
VPS13D-204ENST00000469054 HECTD4Q9Y4D8 3996 aa7.89□□□□□ -1.15
VPS13D-204ENST00000469054 LINC00959A0A1B0GUT2 108 aa7.88□□□□□ -1.15
VPS13D-204ENST00000469054 LINC01546A6NGU7 62 aa7.88□□□□□ -1.15
VPS13D-204ENST00000469054 COLCA2A8K830 154 aa7.88□□□□□ -1.15
VPS13D-204ENST00000469054 G0S2P27469 103 aa7.88□□□□□ -1.15
VPS13D-204ENST00000469054 MRPS36P82909 103 aaKnown RBP7.88□□□□□ -1.15
VPS13D-204ENST00000469054 RNASE13Q5GAN3 156 aaKnown RBP7.88□□□□□ -1.15
VPS13D-204ENST00000469054 FA2HQ7L5A8 372 aa7.88□□□□□ -1.15
VPS13D-204ENST00000469054 C18orf32Q8TCD1 76 aa7.88□□□□□ -1.15
VPS13D-204ENST00000469054 FAM104AQ969W3 186 aa7.88□□□□□ -1.15
VPS13D-204ENST00000469054 OPRPNQ99935 248 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-204ENST00000469054 GAGE12HA6NDE8 117 aa7.87□□□□□ -1.15
VPS13D-204ENST00000469054 C16orf90A8MZG2 172 aa7.87□□□□□ -1.15
VPS13D-204ENST00000469054 SCO1O75880 301 aa7.87□□□□□ -1.15
VPS13D-204ENST00000469054 SS18Q15532 418 aa7.87□□□□□ -1.15
VPS13D-204ENST00000469054 DNAH5Q8TE73 4624 aa7.87□□□□□ -1.15
VPS13D-204ENST00000469054 TRAV13-1A0A0B4J241 112 aa7.86□□□□□ -1.15
VPS13D-204ENST00000469054 C1orf196B1AJZ1 125 aa7.86□□□□□ -1.15
VPS13D-204ENST00000469054 CCL25O15444 150 aa7.86□□□□□ -1.15
VPS13D-204ENST00000469054 TRGC2P03986 189 aa7.86□□□□□ -1.15
VPS13D-204ENST00000469054 LINC00614P0C842 121 aa7.86□□□□□ -1.15
VPS13D-204ENST00000469054 FUSP35637 526 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS13D-204ENST00000469054 CDPF1Q6NVV7 123 aa7.86□□□□□ -1.15
VPS13D-204ENST00000469054 NTN5Q8WTR8 489 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-204ENST00000469054 LRP1BQ9NZR2 4599 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 IGLV4-3A0A075B6K6 122 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 IGIPA6NJ69 53 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 USP17L23D6RBM5 183 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 XCL1P47992 114 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 C14orf177Q52M58 125 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 TOMM6Q96B49 74 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 URB1-AS1Q96HZ7 61 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 TMEM141Q96I45 108 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 AP5S1Q9NUS5 200 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 BIRC6Q9NR09 4857 aa7.85□□□□□ -1.15
VPS13D-204ENST00000469054 IGLV5-52A0A0A0MRZ9 124 aa7.84□□□□□ -1.15
VPS13D-204ENST00000469054 LINC01549A6NIU2 74 aa7.84□□□□□ -1.15
VPS13D-204ENST00000469054 NPSP0C0P6 89 aa7.84□□□□□ -1.15
VPS13D-204ENST00000469054 RAB5BP61020 215 aa7.84□□□□□ -1.15
VPS13D-204ENST00000469054 FOXI1Q12951 378 aa7.84□□□□□ -1.15
VPS13D-204ENST00000469054 CD164L2Q6UWJ8 174 aa7.84□□□□□ -1.15
VPS13D-204ENST00000469054 PKHD1P08F94 4074 aa7.84□□□□□ -1.15
VPS13D-204ENST00000469054 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-204ENST00000469054 FAM229AH3BQW9 127 aa7.83□□□□□ -1.16
VPS13D-204ENST00000469054 S100A1P23297 94 aa7.83□□□□□ -1.16
VPS13D-204ENST00000469054 CFAP161Q6P656 301 aa7.83□□□□□ -1.16
VPS13D-204ENST00000469054 Q6ZN92 141 aa7.83□□□□□ -1.16
VPS13D-204ENST00000469054 SCGB3A1Q96QR1 104 aa7.83□□□□□ -1.16
VPS13D-204ENST00000469054 TIMM17AQ99595 171 aa7.83□□□□□ -1.16
VPS13D-204ENST00000469054 IFITM10A6NMD0 228 aa7.82□□□□□ -1.16
VPS13D-204ENST00000469054 PRSS1P07477 247 aa7.82□□□□□ -1.16
VPS13D-204ENST00000469054 PAPPA-AS1Q5QFB9 102 aa7.82□□□□□ -1.16
VPS13D-204ENST00000469054 TEX43Q6ZNM6 134 aa7.82□□□□□ -1.16
VPS13D-204ENST00000469054 ERASQ7Z444 233 aa7.82□□□□□ -1.16
VPS13D-204ENST00000469054 AMELXQ99217 191 aa7.82□□□□□ -1.16
VPS13D-204ENST00000469054 VCX2Q9H322 139 aa7.82□□□□□ -1.16
VPS13D-204ENST00000469054 ATP6V1G1O75348 118 aa7.81□□□□□ -1.16
VPS13D-204ENST00000469054 GCSHP23434 173 aa7.81□□□□□ -1.16
VPS13D-204ENST00000469054 ZC2HC1BQ5TFG8 222 aa7.81□□□□□ -1.16
VPS13D-204ENST00000469054 C2orf88Q9BSF0 95 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms