RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 FAM104AQ969W3 186 aa13.25□□□□□ -0.29
SMC4-209ENST00000468653 IGLV4-69A0A075B6H9 119 aa13.24□□□□□ -0.29
SMC4-209ENST00000468653 RNASE13Q5GAN3 156 aaKnown RBP13.24□□□□□ -0.29
SMC4-209ENST00000468653 AMMECR1LQ6DCA0 310 aa13.24□□□□□ -0.29
SMC4-209ENST00000468653 Q6ZUT4 128 aa13.24□□□□□ -0.29
SMC4-209ENST00000468653 AMELXQ99217 191 aa13.24□□□□□ -0.29
SMC4-209ENST00000468653 H7C423 109 aa13.23□□□□□ -0.29
SMC4-209ENST00000468653 MRPS36P82909 103 aaKnown RBP13.23□□□□□ -0.29
SMC4-209ENST00000468653 MRPL52Q86TS9 123 aaKnown RBP13.23□□□□□ -0.29
SMC4-209ENST00000468653 C11orf45Q8TAV5 145 aa13.22□□□□□ -0.29
SMC4-209ENST00000468653 CHCHD5Q9BSY4 110 aa13.22□□□□□ -0.29
SMC4-209ENST00000468653 CSDC2Q9Y534 153 aaKnown RBP13.22□□□□□ -0.29
SMC4-209ENST00000468653 C11orf86A6NJI1 115 aa13.22□□□□□ -0.29
SMC4-209ENST00000468653 MRPL23Q16540 153 aaKnown RBP13.22□□□□□ -0.29
SMC4-209ENST00000468653 Q6ZTC4 211 aa13.22□□□□□ -0.29
SMC4-209ENST00000468653 OR5A1Q8NGJ0 315 aa13.22□□□□□ -0.29
SMC4-209ENST00000468653 C2orf88Q9BSF0 95 aa13.22□□□□□ -0.29
SMC4-209ENST00000468653 ICOSQ9Y6W8 199 aa13.22□□□□□ -0.29
SMC4-209ENST00000468653 GAGE6Q13070 117 aa13.21□□□□□ -0.29
SMC4-209ENST00000468653 SLC25A34Q6PIV7 304 aa13.21□□□□□ -0.29
SMC4-209ENST00000468653 TMEM101Q96IK0 257 aa13.21□□□□□ -0.29
SMC4-209ENST00000468653 NMUP48645 174 aa13.2□□□□□ -0.3
SMC4-209ENST00000468653 COX8AP10176 69 aa13.2□□□□□ -0.3
SMC4-209ENST00000468653 NANOS2P60321 138 aaKnown RBP13.2□□□□□ -0.3
SMC4-209ENST00000468653 A0A0J9YXV3 536 aa13.19□□□□□ -0.3
SMC4-209ENST00000468653 DEFA6Q01524 100 aa13.19□□□□□ -0.3
SMC4-209ENST00000468653 SH2D6Q7Z4S9 175 aa13.19□□□□□ -0.3
SMC4-209ENST00000468653 NFE4Q86UQ8 179 aa13.19□□□□□ -0.3
SMC4-209ENST00000468653 CHAC1Q9BUX1 264 aa13.19□□□□□ -0.3
SMC4-209ENST00000468653 HNRNPA3P51991 378 aaKnown RBP13.18□□□□□ -0.3
SMC4-209ENST00000468653 TMEM170BQ5T4T1 132 aa13.18□□□□□ -0.3
SMC4-209ENST00000468653 ZNF25P17030 456 aaPredicted RBP13.17□□□□□ -0.3
SMC4-209ENST00000468653 CDC42SE2Q9NRR3 84 aa13.17□□□□□ -0.3
SMC4-209ENST00000468653 TENM3Q9P273 2699 aa13.17□□□□□ -0.3
SMC4-209ENST00000468653 IGKV2D-26A0A0A0MRZ7 120 aa13.17□□□□□ -0.3
SMC4-209ENST00000468653 HERVK_113P61574 105 aa13.16□□□□□ -0.3
SMC4-209ENST00000468653 TP73-AS1Q9UF72 201 aa13.16□□□□□ -0.3
SMC4-209ENST00000468653 DEFB131BA0A096LNP1 70 aa13.15□□□□□ -0.31
SMC4-209ENST00000468653 TMEM262E9PQX1 116 aa13.15□□□□□ -0.31
SMC4-209ENST00000468653 H3BNG1 76 aa13.15□□□□□ -0.31
SMC4-209ENST00000468653 UBE2D1P51668 147 aa13.15□□□□□ -0.31
SMC4-209ENST00000468653 PCP2Q8IVA1 136 aa13.15□□□□□ -0.31
SMC4-209ENST00000468653 TINCRA0A1B0GVN0 87 aa13.13□□□□□ -0.31
SMC4-209ENST00000468653 E9PLD3 99 aa13.13□□□□□ -0.31
SMC4-209ENST00000468653 ZNF22P17026 224 aaPredicted RBP13.13□□□□□ -0.31
SMC4-209ENST00000468653 BOD1L2Q8IYS8 172 aa13.13□□□□□ -0.31
SMC4-209ENST00000468653 CTAG1AP78358 180 aa13.12□□□□□ -0.31
SMC4-209ENST00000468653 GEMIN7Q9H840 131 aaKnown RBP13.12□□□□□ -0.31
SMC4-209ENST00000468653 IGLV4-60A0A075B6I1 120 aa13.12□□□□□ -0.31
SMC4-209ENST00000468653 TRAV13-1A0A0B4J241 112 aa13.12□□□□□ -0.31
SMC4-209ENST00000468653 TRAV8-6A0A0B4J262 113 aa13.12□□□□□ -0.31
SMC4-209ENST00000468653 KRTAP21-3Q3LHN1 58 aa13.12□□□□□ -0.31
SMC4-209ENST00000468653 B9D2Q9BPU9 175 aa13.12□□□□□ -0.31
SMC4-209ENST00000468653 DLEU1O43261 78 aa13.11□□□□□ -0.31
SMC4-209ENST00000468653 TTTY13Q9BZ97 58 aa13.11□□□□□ -0.31
SMC4-209ENST00000468653 MRPS16Q9Y3D3 137 aaKnown RBP13.11□□□□□ -0.31
SMC4-209ENST00000468653 LELP1Q5T871 98 aa13.1□□□□□ -0.31
SMC4-209ENST00000468653 A0A1B0GUV1 79 aa13.09□□□□□ -0.31
SMC4-209ENST00000468653 TMEM223A0PJW6 202 aa13.09□□□□□ -0.31
SMC4-209ENST00000468653 SEC11AP67812 179 aa13.09□□□□□ -0.31
SMC4-209ENST00000468653 LINC00469Q8N7U9 141 aa13.09□□□□□ -0.31
SMC4-209ENST00000468653 TRAV10A0A0B4J240 114 aa13.09□□□□□ -0.31
SMC4-209ENST00000468653 TIRAPP58753 221 aa13.09□□□□□ -0.31
SMC4-209ENST00000468653 RBX1P62877 108 aa13.09□□□□□ -0.31
SMC4-209ENST00000468653 MPV17L2Q567V2 206 aa13.09□□□□□ -0.31
SMC4-209ENST00000468653 LINC00242Q5T6M2 205 aa13.08□□□□□ -0.32
SMC4-209ENST00000468653 LYPD5Q6UWN5 251 aa13.08□□□□□ -0.32
SMC4-209ENST00000468653 IGKV3OR2-268A0A0C4DH90 116 aa13.07□□□□□ -0.32
SMC4-209ENST00000468653 HERVK_113P63121 156 aa13.07□□□□□ -0.32
SMC4-209ENST00000468653 FAM19A3Q7Z5A8 133 aa13.07□□□□□ -0.32
SMC4-209ENST00000468653 MAPKAPK5-AS1Q8N8E1 139 aa13.07□□□□□ -0.32
SMC4-209ENST00000468653 COX6A2Q02221 97 aa13.06□□□□□ -0.32
SMC4-209ENST00000468653 C2orf91Q6ZV80 131 aa13.06□□□□□ -0.32
SMC4-209ENST00000468653 IGHV3-64A0A075B6Q5 118 aa13.05□□□□□ -0.32
SMC4-209ENST00000468653 H3BRM9 83 aa13.05□□□□□ -0.32
SMC4-209ENST00000468653 M0R143 59 aa13.05□□□□□ -0.32
SMC4-209ENST00000468653 SIVA1O15304 175 aa13.05□□□□□ -0.32
SMC4-209ENST00000468653 MYMXA0A1B0GTQ4 84 aa13.04□□□□□ -0.32
SMC4-209ENST00000468653 LEPROTO15243 131 aa13.04□□□□□ -0.32
SMC4-209ENST00000468653 CDKN2A-AS1Q9UH64 79 aa13.04□□□□□ -0.32
SMC4-209ENST00000468653 IGLV5-45A0A087WSX0 123 aa13.04□□□□□ -0.32
SMC4-209ENST00000468653 ZNF815PA8K554 130 aa13.03□□□□□ -0.32
SMC4-209ENST00000468653 J3QQQ9 107 aa13.03□□□□□ -0.32
SMC4-209ENST00000468653 SPINK8P0C7L1 97 aa13.03□□□□□ -0.32
SMC4-209ENST00000468653 LGALS3P17931 250 aaKnown RBP13.03□□□□□ -0.32
SMC4-209ENST00000468653 PLEKHB2Q96CS7 222 aa13.03□□□□□ -0.32
SMC4-209ENST00000468653 SNHG12Q9BXW3 62 aa13.03□□□□□ -0.32
SMC4-209ENST00000468653 TRAV8-3A0A0A6YYJ7 113 aa13.02□□□□□ -0.33
SMC4-209ENST00000468653 ANGP03950 147 aaKnown RBP13.02□□□□□ -0.33
SMC4-209ENST00000468653 TSPEAR-AS2P59090 65 aa13.02□□□□□ -0.33
SMC4-209ENST00000468653 BATFQ16520 125 aa13.02□□□□□ -0.33
SMC4-209ENST00000468653 IGHV1-58A0A0C4DH39 117 aa13.01□□□□□ -0.33
SMC4-209ENST00000468653 EREGO14944 169 aa13.01□□□□□ -0.33
SMC4-209ENST00000468653 NHLRC4P0CG21 123 aaPredicted RBP13.01□□□□□ -0.33
SMC4-209ENST00000468653 HINT1P49773 126 aaPredicted RBP13.01□□□□□ -0.33
SMC4-209ENST00000468653 LINC00959A0A1B0GUT2 108 aa13□□□□□ -0.33
SMC4-209ENST00000468653 IGHV3-30-3P0DP02 117 aa13□□□□□ -0.33
SMC4-209ENST00000468653 CLPSL2Q6UWE3 100 aa13□□□□□ -0.33
SMC4-209ENST00000468653 Q8N3U1 123 aa13□□□□□ -0.33
SMC4-209ENST00000468653 C15orf53Q8NAA6 179 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms