RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 SLPIP03973 132 aa14.14□□□□□ -0.15
CCDC88B-204ENST00000463837 NDUFB1O75438 58 aa14.13□□□□□ -0.15
CCDC88B-204ENST00000463837 PIK3CD-AS1Q5SR53 167 aa14.13□□□□□ -0.15
CCDC88B-204ENST00000463837 SRCAPQ6ZRS2 3230 aa14.13□□□□□ -0.15
CCDC88B-204ENST00000463837 GAS8-AS1O95177 125 aa14.13□□□□□ -0.15
CCDC88B-204ENST00000463837 C2CD3Q4AC94 2353 aa14.13□□□□□ -0.15
CCDC88B-204ENST00000463837 XGP55808 180 aa14.12□□□□□ -0.15
CCDC88B-204ENST00000463837 C11orf71Q6IPW1 123 aa14.12□□□□□ -0.15
CCDC88B-204ENST00000463837 HCFC1P51610 2035 aa14.12□□□□□ -0.15
CCDC88B-204ENST00000463837 MRPS36P82909 103 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-204ENST00000463837 C9orf85Q96MD7 179 aa14.11□□□□□ -0.15
CCDC88B-204ENST00000463837 COX8CQ7Z4L0 72 aa14.11□□□□□ -0.15
CCDC88B-204ENST00000463837 FAM236DA0A1B0GTK5 79 aa14.11□□□□□ -0.15
CCDC88B-204ENST00000463837 FAM236CP0DP71 79 aa14.11□□□□□ -0.15
CCDC88B-204ENST00000463837 SVIPQ8NHG7 77 aa14.11□□□□□ -0.15
CCDC88B-204ENST00000463837 A8MZ25 164 aa14.11□□□□□ -0.15
CCDC88B-204ENST00000463837 DEFB114Q30KQ6 69 aa14.1□□□□□ -0.15
CCDC88B-204ENST00000463837 PRR9Q5T870 116 aa14.1□□□□□ -0.15
CCDC88B-204ENST00000463837 WFDC11Q8NEX6 87 aa14.1□□□□□ -0.15
CCDC88B-204ENST00000463837 NDUFA7O95182 113 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 FAM110AQ9BQ89 295 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 C19orf84I3L1E1 186 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 FAM240AA0A1B0GVK7 77 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 SMIM9A6NGZ8 99 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 IGHV4-31P0DP07 118 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 Q6YL49 198 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 TRBV6-4A0A1B0GX49 114 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 ENHOQ6UWT2 76 aa14.09□□□□□ -0.15
CCDC88B-204ENST00000463837 PROK1P58294 105 aa14.08□□□□□ -0.16
CCDC88B-204ENST00000463837 Q6ZS46 218 aa14.08□□□□□ -0.16
CCDC88B-204ENST00000463837 SERP2Q8N6R1 65 aa14.08□□□□□ -0.16
CCDC88B-204ENST00000463837 IGIPA6NJ69 53 aa14.08□□□□□ -0.16
CCDC88B-204ENST00000463837 PSMG3-AS1Q96PY0 264 aa14.07□□□□□ -0.16
CCDC88B-204ENST00000463837 CCDC179H3BU77 68 aa14.07□□□□□ -0.16
CCDC88B-204ENST00000463837 BPY2O14599 106 aa14.07□□□□□ -0.16
CCDC88B-204ENST00000463837 REG3AQ06141 175 aa14.07□□□□□ -0.16
CCDC88B-204ENST00000463837 NAV2Q8IVL1 2488 aa14.06□□□□□ -0.16
CCDC88B-204ENST00000463837 UBE2D4Q9Y2X8 147 aa14.06□□□□□ -0.16
CCDC88B-204ENST00000463837 LINC00269Q8N2A0 174 aa14.06□□□□□ -0.16
CCDC88B-204ENST00000463837 LYRM9A8MSI8 78 aa14.06□□□□□ -0.16
CCDC88B-204ENST00000463837 CRYGDP07320 174 aa14.06□□□□□ -0.16
CCDC88B-204ENST00000463837 UBE2D1P51668 147 aa14.05□□□□□ -0.16
CCDC88B-204ENST00000463837 C11orf45Q8TAV5 145 aa14.05□□□□□ -0.16
CCDC88B-204ENST00000463837 SORL1Q92673 2214 aa14.05□□□□□ -0.16
CCDC88B-204ENST00000463837 UBE2AP49459 152 aa14.05□□□□□ -0.16
CCDC88B-204ENST00000463837 SCXQ7RTU7 201 aa14.05□□□□□ -0.16
CCDC88B-204ENST00000463837 TRBV6-8A0A0A6YYG3 113 aa14.05□□□□□ -0.16
CCDC88B-204ENST00000463837 SHISA2Q6UWI4 295 aa14.05□□□□□ -0.16
CCDC88B-204ENST00000463837 C14orf177Q52M58 125 aa14.05□□□□□ -0.16
CCDC88B-204ENST00000463837 ATP5EP56381 51 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-204ENST00000463837 CHCHD10Q8WYQ3 142 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-204ENST00000463837 CHKB-CPT1BH3BT56 60 aa14.04□□□□□ -0.16
CCDC88B-204ENST00000463837 LRP4O75096 1905 aa14.04□□□□□ -0.16
CCDC88B-204ENST00000463837 COX7CP15954 63 aa14.03□□□□□ -0.16
CCDC88B-204ENST00000463837 C4orf48Q5BLP8 95 aa14.03□□□□□ -0.16
CCDC88B-204ENST00000463837 MPLKIPQ8TAP9 179 aa14.03□□□□□ -0.16
CCDC88B-204ENST00000463837 NDUFC1O43677 76 aa14.02□□□□□ -0.16
CCDC88B-204ENST00000463837 ZNF843Q8N446 348 aa14.02□□□□□ -0.17
CCDC88B-204ENST00000463837 UBE2D3P61077 147 aa14.01□□□□□ -0.17
CCDC88B-204ENST00000463837 UBE2D2P62837 147 aa14.01□□□□□ -0.17
CCDC88B-204ENST00000463837 CCDC168Q8NDH2 2452 aa14.01□□□□□ -0.17
CCDC88B-204ENST00000463837 INAFM1C9JVW0 142 aa14□□□□□ -0.17
CCDC88B-204ENST00000463837 USP17L23D6RBM5 183 aa14□□□□□ -0.17
CCDC88B-204ENST00000463837 NAV3Q8IVL0 2385 aa14□□□□□ -0.17
CCDC88B-204ENST00000463837 A0A096LNJ9 63 aa13.99□□□□□ -0.17
CCDC88B-204ENST00000463837 IGLV1-40P01703 118 aa13.99□□□□□ -0.17
CCDC88B-204ENST00000463837 COL5A1P20908 1838 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-204ENST00000463837 Q6JHZ5 121 aa13.98□□□□□ -0.17
CCDC88B-204ENST00000463837 NDUFC2-KCTD14E9PQ53 114 aa13.98□□□□□ -0.17
CCDC88B-204ENST00000463837 HILS1P60008 231 aa13.98□□□□□ -0.17
CCDC88B-204ENST00000463837 DCANP1Q8TF63 244 aa13.98□□□□□ -0.17
CCDC88B-204ENST00000463837 CPAMD8Q8IZJ3 1885 aa13.98□□□□□ -0.17
CCDC88B-204ENST00000463837 IGLV4-69A0A075B6H9 119 aa13.98□□□□□ -0.17
CCDC88B-204ENST00000463837 MRGPRG-AS1Q2M3A8 158 aa13.98□□□□□ -0.17
CCDC88B-204ENST00000463837 NCOR2Q9Y618 2525 aa13.97□□□□□ -0.17
CCDC88B-204ENST00000463837 HIVEP3Q5T1R4 2406 aa13.96□□□□□ -0.17
CCDC88B-204ENST00000463837 CEP192Q8TEP8 1941 aa13.96□□□□□ -0.17
CCDC88B-204ENST00000463837 C6orf99Q4VX62 202 aa13.96□□□□□ -0.17
CCDC88B-204ENST00000463837 C10orf99Q6UWK7 81 aa13.96□□□□□ -0.17
CCDC88B-204ENST00000463837 MUC7Q8TAX7 377 aa13.96□□□□□ -0.18
CCDC88B-204ENST00000463837 H0Y9J4 135 aa13.95□□□□□ -0.18
CCDC88B-204ENST00000463837 M0QXV9 152 aa13.95□□□□□ -0.18
CCDC88B-204ENST00000463837 Q6ZSV7 163 aa13.94□□□□□ -0.18
CCDC88B-204ENST00000463837 ARHGAP32A7KAX9 2087 aa13.94□□□□□ -0.18
CCDC88B-204ENST00000463837 PTPRSQ13332 1948 aa13.94□□□□□ -0.18
CCDC88B-204ENST00000463837 SMIM11BQ8TCY0 68 aa13.94□□□□□ -0.18
CCDC88B-204ENST00000463837 IGLV2-18A0A075B6J9 118 aa13.93□□□□□ -0.18
CCDC88B-204ENST00000463837 A0A0U1RQV1 116 aa13.93□□□□□ -0.18
CCDC88B-204ENST00000463837 POM121L12Q8N7R1 296 aa13.93□□□□□ -0.18
CCDC88B-204ENST00000463837 COX17Q14061 63 aa13.93□□□□□ -0.18
CCDC88B-204ENST00000463837 CRIP2P52943 208 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-204ENST00000463837 XAGE1AQ9HD64 81 aa13.92□□□□□ -0.18
CCDC88B-204ENST00000463837 CD164L2Q6UWJ8 174 aa13.92□□□□□ -0.18
CCDC88B-204ENST00000463837 EML5Q05BV3 1969 aa13.92□□□□□ -0.18
CCDC88B-204ENST00000463837 SPTSSBQ8NFR3 76 aa13.91□□□□□ -0.18
CCDC88B-204ENST00000463837 DEFB131BA0A096LNP1 70 aa13.9□□□□□ -0.18
CCDC88B-204ENST00000463837 MIFP14174 115 aa13.9□□□□□ -0.18
CCDC88B-204ENST00000463837 SNURFQ9Y675 71 aa13.9□□□□□ -0.18
CCDC88B-204ENST00000463837 PRM2P04554 102 aa13.89□□□□□ -0.19
CCDC88B-204ENST00000463837 ZNF702PQ9H963 129 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms