RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TTTY13Q9BZ97 58 aa3.4□□□□□ -1.86
CCDC88A-209ENST00000456975 NSD1Q96L73 2696 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-209ENST00000456975 ZNF407Q9C0G0 2248 aa3.4□□□□□ -1.87
CCDC88A-209ENST00000456975 C16orf90A8MZG2 172 aa3.4□□□□□ -1.87
CCDC88A-209ENST00000456975 F8WEM9 126 aa3.4□□□□□ -1.87
CCDC88A-209ENST00000456975 MRPL51Q4U2R6 128 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-209ENST00000456975 FAM216BQ8N7L0 139 aa3.4□□□□□ -1.87
CCDC88A-209ENST00000456975 C9orf106Q8NAJ2 232 aa3.4□□□□□ -1.87
CCDC88A-209ENST00000456975 SND1-IT1Q9HBX3 110 aa3.4□□□□□ -1.87
CCDC88A-209ENST00000456975 FREM3P0C091 2139 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 H7C423 109 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 TFF3Q07654 80 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 Q6ZRP5 223 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 PFN4Q8NHR9 129 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 CELA1Q9UNI1 258 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 UBE2D4Q9Y2X8 147 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 TIMM9Q9Y5J7 89 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 DNAJC13O75165 2243 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 AKAP6Q13023 2319 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 IGKV1D-42A0A075B6H8 117 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 GNRH2O43555 120 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 LINC01547P58512 204 aaPredicted RBP3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 DSCR9P59020 149 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 KRTAP10-2P60368 255 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 Q6JHZ5 121 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 ZNF818PQ6ZRF7 136 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 VMO1Q7Z5L0 202 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 PSENENQ9NZ42 101 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 PRO1854Q9UHT4 67 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 NDUFA12Q9UI09 145 aa3.39□□□□□ -1.87
CCDC88A-209ENST00000456975 TANC2Q9HCD6 1990 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 AGRNO00468 2067 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 JMJD1CQ15652 2540 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 IGKV3D-15A0A087WSY6 115 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 TMEM223A0PJW6 202 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 LY6G6DO95868 133 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 C11orf71Q6IPW1 123 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 Q6ZR03 302 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 CYYR1Q96J86 154 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 MED12Q93074 2177 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 TRAV7A0A075B6U4 112 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 A8MU10 97 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 LEPROTO15243 131 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 IGKV1D-33P01593 117 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 IGKV1-33P01594 117 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 BGLAPP02818 100 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 PRB4P10163 310 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 MIFP14174 115 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 C2orf83Q53S99 150 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 REG3GQ6UW15 175 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 LYZL2Q7Z4W2 148 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 DYNAPQ8N1N2 210 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 SPTSSBQ8NFR3 76 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 TIMM21Q9BVV7 248 aa3.38□□□□□ -1.87
CCDC88A-209ENST00000456975 C3orf84H3BNL1 204 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 CFC1BP0CG36 223 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 CFC1P0CG37 223 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 PLGLAQ15195 96 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 C15orf32Q32M92 178 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 TMEM61Q8N0U2 210 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 ORMDL3Q8N138 153 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 DYNLRB2Q8TF09 96 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 PHLDA3Q9Y5J5 127 aa3.37□□□□□ -1.87
CCDC88A-209ENST00000456975 A0A096LNJ9 63 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 IGHV3-15A0A0B4J1V0 119 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 TRAV22A0A0B4J277 110 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 CPSF4LA6NMK7 179 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 DEFB113Q30KQ7 82 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 ADAMTSL4-AS1Q5T5F5 129 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 TMEM141Q96I45 108 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 COL6A5A8TX70 2615 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 FBN1P35555 2871 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 IGHV4-4A0A075B6R2 117 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 HCG22E2RYF7 251 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 KRTAP4-12Q9BQ66 201 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 DOCK11Q5JSL3 2073 aa3.36□□□□□ -1.87
CCDC88A-209ENST00000456975 A0A087WVE0 104 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 IGHV3-38A0A0C4DH36 116 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 TRBV30A0A0K0K1B3 111 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 SMIM1B2RUZ4 78 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 NANOS2P60321 138 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 FHL1Q13642 323 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 KRTAP15-1Q3LI76 137 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 LCE1DQ5T752 114 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 Q8N6K4 173 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 ZNF525Q8N782 197 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 CNEP1R1Q8N9A8 125 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 TIMM8BQ9Y5J9 83 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 NBEAL1Q6ZS30 2694 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 STAB1Q9NY15 2570 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 IGHV3-33P01772 117 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 SAA1P0DJI8 122 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 FXYD3Q14802 87 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 FAM53AQ6NSI3 398 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 RMI2Q96E14 147 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 ATRQ13535 2644 aa3.35□□□□□ -1.87
CCDC88A-209ENST00000456975 HIVEP2P31629 2446 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 IGHV3OR16-12A0A075B7B8 117 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 IGHV1OR15-1A0A075B7D0 117 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 IGHV3-43DP0DP04 118 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms