RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 IGLV5-45A0A087WSX0 123 aa10.77□□□□□ -0.69
LDLR-202ENST00000455727 UBE2D3P61077 147 aa10.77□□□□□ -0.69
LDLR-202ENST00000455727 UBE2D2P62837 147 aa10.77□□□□□ -0.69
LDLR-202ENST00000455727 DGAT2L7PQ6IED9 249 aa10.77□□□□□ -0.69
LDLR-202ENST00000455727 OVOL2Q9BRP0 275 aa10.77□□□□□ -0.69
LDLR-202ENST00000455727 WFDC10AQ9H1F0 79 aa10.76□□□□□ -0.69
LDLR-202ENST00000455727 GEMIN7Q9H840 131 aaKnown RBP10.76□□□□□ -0.69
LDLR-202ENST00000455727 PRO1854Q9UHT4 67 aa10.76□□□□□ -0.69
LDLR-202ENST00000455727 TRAV8-3A0A0A6YYJ7 113 aa10.76□□□□□ -0.69
LDLR-202ENST00000455727 GAGE13Q4V321 117 aa10.76□□□□□ -0.69
LDLR-202ENST00000455727 LYRM7Q5U5X0 104 aa10.76□□□□□ -0.69
LDLR-202ENST00000455727 RPL35AP18077 110 aaKnown RBP10.75□□□□□ -0.69
LDLR-202ENST00000455727 WFDC2Q14508 124 aa10.75□□□□□ -0.69
LDLR-202ENST00000455727 FAM19A3Q7Z5A8 133 aa10.75□□□□□ -0.69
LDLR-202ENST00000455727 SMAGPQ0VAQ4 97 aa10.75□□□□□ -0.69
LDLR-202ENST00000455727 PRO0461Q9UI25 63 aa10.75□□□□□ -0.69
LDLR-202ENST00000455727 A4D1N5 150 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 NTM-AS1Q6ZSK4 140 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 SBSPONQ8IVN8 264 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 SMR3AQ99954 134 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 GTSF1LQ9H1H1 148 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 NDUFA12Q9UI09 145 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 NIPBLQ6KC79 2804 aaeCLIP10.74□□□□□ -0.69
LDLR-202ENST00000455727 A0A0B4J2C4 111 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 MUSTN1Q8IVN3 82 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 LITAFQ99732 161 aa10.74□□□□□ -0.69
LDLR-202ENST00000455727 TRBV6-4A0A1B0GX49 114 aa10.73□□□□□ -0.69
LDLR-202ENST00000455727 ZFAND6Q6FIF0 208 aa10.73□□□□□ -0.69
LDLR-202ENST00000455727 HIVEP2P31629 2446 aa10.73□□□□□ -0.69
LDLR-202ENST00000455727 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.73□□□□□ -0.69
LDLR-202ENST00000455727 KRTAP10-3P60369 221 aa10.73□□□□□ -0.69
LDLR-202ENST00000455727 JMJD1CQ15652 2540 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 TRGV2A0A075B6R0 118 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 LOC107984156A0A0G2JMH3 177 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 SPINK8P0C7L1 97 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 LINC00694P0DN24 101 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 HERVK_113P63121 156 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 ARL17AQ8IVW1 177 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 SPANXDQ9BXN6 97 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 SPANXCQ9NY87 97 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 CDKN2A-AS1Q9UH64 79 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 TRBV20-1A0A075B6N2 111 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 GAGE12JA6NER3 117 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 GAGE7O76087 117 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 LY6G6DO95868 133 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 GAGE12FP0CL80 117 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 GAGE12GP0CL81 117 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 GAGE12IP0CL82 117 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 GAGE4Q13068 117 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 GAGE5Q13069 117 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 LINC00482Q8N8I6 264 aa10.72□□□□□ -0.69
LDLR-202ENST00000455727 TIMM17BO60830 172 aa10.7□□□□□ -0.7
LDLR-202ENST00000455727 LINC00242Q5T6M2 205 aa10.7□□□□□ -0.7
LDLR-202ENST00000455727 H7C423 109 aa10.7□□□□□ -0.7
LDLR-202ENST00000455727 J3QR89 54 aa10.7□□□□□ -0.7
LDLR-202ENST00000455727 IGHV3-33P01772 117 aa10.7□□□□□ -0.7
LDLR-202ENST00000455727 PF4P02776 101 aa10.7□□□□□ -0.7
LDLR-202ENST00000455727 TMEM101Q96IK0 257 aa10.7□□□□□ -0.7
LDLR-202ENST00000455727 CDC42SE2Q9NRR3 84 aa10.7□□□□□ -0.7
LDLR-202ENST00000455727 FASNP49327 2511 aaKnown RBP10.7□□□□□ -0.7
LDLR-202ENST00000455727 NOTCH3Q9UM47 2321 aa10.69□□□□□ -0.7
LDLR-202ENST00000455727 EIF4EBP3O60516 100 aaPredicted RBP10.69□□□□□ -0.7
LDLR-202ENST00000455727 PSMB2P49721 201 aa10.69□□□□□ -0.7
LDLR-202ENST00000455727 ETDBQ3ZM63 59 aa10.69□□□□□ -0.7
LDLR-202ENST00000455727 SH2D6Q7Z4S9 175 aa10.69□□□□□ -0.7
LDLR-202ENST00000455727 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.69□□□□□ -0.7
LDLR-202ENST00000455727 RNF183Q96D59 192 aa10.69□□□□□ -0.7
LDLR-202ENST00000455727 IGLV5-39A0A0G2JS06 123 aa10.69□□□□□ -0.7
LDLR-202ENST00000455727 NDUFA1O15239 70 aa10.69□□□□□ -0.7
LDLR-202ENST00000455727 COX6A2Q02221 97 aa10.69□□□□□ -0.7
LDLR-202ENST00000455727 A8MZ25 164 aa10.68□□□□□ -0.7
LDLR-202ENST00000455727 MIAQ16674 131 aa10.68□□□□□ -0.7
LDLR-202ENST00000455727 ADAMTSL4-AS1Q5T5F5 129 aa10.68□□□□□ -0.7
LDLR-202ENST00000455727 TMEM243Q9BU79 118 aa10.68□□□□□ -0.7
LDLR-202ENST00000455727 ERG28Q9UKR5 140 aa10.68□□□□□ -0.7
LDLR-202ENST00000455727 SFTA2Q6UW10 78 aa10.68□□□□□ -0.7
LDLR-202ENST00000455727 TRGV4A0A0C4DH28 118 aa10.67□□□□□ -0.7
LDLR-202ENST00000455727 MTURNQ8N3F0 131 aa10.67□□□□□ -0.7
LDLR-202ENST00000455727 TCL1BO95988 128 aa10.67□□□□□ -0.7
LDLR-202ENST00000455727 PRSS2P07478 247 aa10.67□□□□□ -0.7
LDLR-202ENST00000455727 INSL3P51460 131 aa10.67□□□□□ -0.7
LDLR-202ENST00000455727 FHL2Q14192 279 aa10.67□□□□□ -0.7
LDLR-202ENST00000455727 UBE2L6O14933 153 aa10.66□□□□□ -0.7
LDLR-202ENST00000455727 IFITM1P13164 125 aa10.66□□□□□ -0.7
LDLR-202ENST00000455727 KIR2DL5BQ8NHK3 375 aa10.66□□□□□ -0.7
LDLR-202ENST00000455727 GAGE12HA6NDE8 117 aa10.65□□□□□ -0.7
LDLR-202ENST00000455727 SCGB1C2P0DMR2 95 aa10.65□□□□□ -0.7
LDLR-202ENST00000455727 SMCPP49901 116 aaPredicted RBP10.65□□□□□ -0.7
LDLR-202ENST00000455727 ATP6V0E2Q8NHE4 81 aa10.65□□□□□ -0.7
LDLR-202ENST00000455727 SIGMAR1Q99720 223 aa10.65□□□□□ -0.7
LDLR-202ENST00000455727 LOC100131303A0A0U1RQF7 123 aa10.64□□□□□ -0.71
LDLR-202ENST00000455727 LINC00612Q8N6U2 182 aa10.64□□□□□ -0.71
LDLR-202ENST00000455727 TRAV13-1A0A0B4J241 112 aa10.64□□□□□ -0.71
LDLR-202ENST00000455727 SMIM1B2RUZ4 78 aa10.64□□□□□ -0.71
LDLR-202ENST00000455727 CIRBPQ14011 172 aaKnown RBP10.64□□□□□ -0.71
LDLR-202ENST00000455727 GCN1Q92616 2671 aaKnown RBP10.63□□□□□ -0.71
LDLR-202ENST00000455727 SMIM9A6NGZ8 99 aa10.63□□□□□ -0.71
LDLR-202ENST00000455727 F5H768 121 aa10.63□□□□□ -0.71
LDLR-202ENST00000455727 SPATA25Q9BR10 227 aa10.63□□□□□ -0.71
LDLR-202ENST00000455727 TRBV30A0A0K0K1B3 111 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms