RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PYGO1Q9Y3Y4 419 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 TRAV8-3A0A0A6YYJ7 113 aa6.91□□□□□ -1.3
CD44-207ENST00000425428 RBX1P62877 108 aa6.91□□□□□ -1.3
CD44-207ENST00000425428 PMCHL1Q16048 86 aa6.91□□□□□ -1.3
CD44-207ENST00000425428 MPV17L2Q567V2 206 aa6.91□□□□□ -1.3
CD44-207ENST00000425428 COA6Q5JTJ3 125 aaKnown RBP6.91□□□□□ -1.3
CD44-207ENST00000425428 ZNF664Q8N3J9 261 aa6.91□□□□□ -1.3
CD44-207ENST00000425428 UBE2D4Q9Y2X8 147 aa6.91□□□□□ -1.3
CD44-207ENST00000425428 PRSS1P07477 247 aa6.9□□□□□ -1.3
CD44-207ENST00000425428 FAM19A2Q8N3H0 131 aa6.9□□□□□ -1.3
CD44-207ENST00000425428 LINC00476Q8WZB0 136 aa6.9□□□□□ -1.3
CD44-207ENST00000425428 KLK12Q9UKR0 248 aa6.9□□□□□ -1.3
CD44-207ENST00000425428 MRPS36P82909 103 aaKnown RBP6.9□□□□□ -1.31
CD44-207ENST00000425428 SS18Q15532 418 aa6.9□□□□□ -1.31
CD44-207ENST00000425428 Q8N976 141 aa6.9□□□□□ -1.31
CD44-207ENST00000425428 PACRGQ96M98 296 aaPredicted RBP6.9□□□□□ -1.31
CD44-207ENST00000425428 MAP1LC3CQ9BXW4 147 aa6.9□□□□□ -1.31
CD44-207ENST00000425428 IGKV3OR2-268A0A0C4DH90 116 aa6.89□□□□□ -1.31
CD44-207ENST00000425428 CCL25O15444 150 aa6.89□□□□□ -1.31
CD44-207ENST00000425428 FABP4P15090 132 aa6.89□□□□□ -1.31
CD44-207ENST00000425428 SEC11AP67812 179 aa6.89□□□□□ -1.31
CD44-207ENST00000425428 NFE4Q86UQ8 179 aa6.89□□□□□ -1.31
CD44-207ENST00000425428 IFI27L1Q96BM0 104 aa6.89□□□□□ -1.31
CD44-207ENST00000425428 URB1-AS1Q96HZ7 61 aa6.89□□□□□ -1.31
CD44-207ENST00000425428 TRAV8-4A0A0B4J246 113 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 REG3AQ06141 175 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 MIAQ16674 131 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 PDZD11Q5EBL8 140 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 LINC00269Q8N2A0 174 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 UBE2WQ96B02 151 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 CDC42SE2Q9NRR3 84 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 COX11Q9Y6N1 276 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 TENM2Q9NT68 2774 aa6.88□□□□□ -1.31
CD44-207ENST00000425428 NBDYA0A0U1RRE5 68 aa6.87□□□□□ -1.31
CD44-207ENST00000425428 IFITM10A6NMD0 228 aa6.87□□□□□ -1.31
CD44-207ENST00000425428 SNRPEP62304 92 aaKnown RBP6.87□□□□□ -1.31
CD44-207ENST00000425428 PMVKQ15126 192 aa6.87□□□□□ -1.31
CD44-207ENST00000425428 C1orf43Q9BWL3 253 aa6.87□□□□□ -1.31
CD44-207ENST00000425428 TM2D2Q9BX73 214 aa6.87□□□□□ -1.31
CD44-207ENST00000425428 IGLV4-60A0A075B6I1 120 aa6.87□□□□□ -1.31
CD44-207ENST00000425428 IGIPA6NJ69 53 aa6.87□□□□□ -1.31
CD44-207ENST00000425428 AKR1D1P51857 326 aa6.87□□□□□ -1.31
CD44-207ENST00000425428 IGLV4-3A0A075B6K6 122 aa6.86□□□□□ -1.31
CD44-207ENST00000425428 C20orf202A1L168 122 aa6.86□□□□□ -1.31
CD44-207ENST00000425428 IBA57-AS1B1ANH7 110 aa6.86□□□□□ -1.31
CD44-207ENST00000425428 H0Y8G0 127 aa6.86□□□□□ -1.31
CD44-207ENST00000425428 PSCAO43653 123 aa6.86□□□□□ -1.31
CD44-207ENST00000425428 CLPSL2Q6UWE3 100 aa6.86□□□□□ -1.31
CD44-207ENST00000425428 Q6ZUT4 128 aa6.86□□□□□ -1.31
CD44-207ENST00000425428 CSMD3Q7Z407 3707 aa6.86□□□□□ -1.31
CD44-207ENST00000425428 TRAV13-1A0A0B4J241 112 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 NUPR1O60356 82 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 GEMIN7Q9H840 131 aaKnown RBP6.85□□□□□ -1.31
CD44-207ENST00000425428 Q9HAA7 133 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 IGKV2D-24A0A075B6R9 120 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 A0A096LNJ9 63 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 C5orf52A6NGY3 159 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 M0R2N4 97 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 LINC00310P59036 64 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 RNASE13Q5GAN3 156 aaKnown RBP6.85□□□□□ -1.31
CD44-207ENST00000425428 HIST3H2BBQ8N257 126 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 BAALCQ8WXS3 180 aa6.85□□□□□ -1.31
CD44-207ENST00000425428 DYNC2H1Q8NCM8 4307 aaKnown RBP6.84□□□□□ -1.31
CD44-207ENST00000425428 LCE6AA0A183 80 aa6.84□□□□□ -1.31
CD44-207ENST00000425428 KRTDAPP60985 99 aa6.84□□□□□ -1.31
CD44-207ENST00000425428 OPRPNQ99935 248 aaPredicted RBP6.84□□□□□ -1.31
CD44-207ENST00000425428 PRR34Q9NV39 138 aa6.84□□□□□ -1.31
CD44-207ENST00000425428 TRAV12-1A0A0B4J245 112 aa6.83□□□□□ -1.32
CD44-207ENST00000425428 LINC00959A0A1B0GUT2 108 aa6.83□□□□□ -1.32
CD44-207ENST00000425428 HERVK_113P63121 156 aa6.83□□□□□ -1.32
CD44-207ENST00000425428 AMELXQ99217 191 aa6.83□□□□□ -1.32
CD44-207ENST00000425428 CST9LQ9H4G1 147 aa6.83□□□□□ -1.32
CD44-207ENST00000425428 CHTOPQ9Y3Y2 248 aaKnown RBP6.83□□□□□ -1.32
CD44-207ENST00000425428 STARD9Q9P2P6 4700 aa6.83□□□□□ -1.32
CD44-207ENST00000425428 PRSS29PA6NIE9 313 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 MALP21145 153 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 C1orf134Q5TEV5 83 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 Q8N3U1 123 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 IGLV10-54A0A075B6I4 117 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 H3BRM9 83 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 XCL1P47992 114 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 CFAP161Q6P656 301 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 PET117Q6UWS5 81 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 ENHOQ6UWT2 76 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 C6orf223Q8N319 242 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 CHCHD10Q8WYQ3 142 aaPredicted RBP6.82□□□□□ -1.32
CD44-207ENST00000425428 HIST1H2BLQ99880 126 aa6.82□□□□□ -1.32
CD44-207ENST00000425428 SYS1-DBNDD2H3BUS1 97 aa6.81□□□□□ -1.32
CD44-207ENST00000425428 APOMO95445 188 aa6.81□□□□□ -1.32
CD44-207ENST00000425428 PLNP26678 52 aa6.81□□□□□ -1.32
CD44-207ENST00000425428 CD164L2Q6UWJ8 174 aa6.81□□□□□ -1.32
CD44-207ENST00000425428 TINCRA0A1B0GVN0 87 aa6.8□□□□□ -1.32
CD44-207ENST00000425428 F8VRH5 84 aa6.8□□□□□ -1.32
CD44-207ENST00000425428 EREGO14944 169 aa6.8□□□□□ -1.32
CD44-207ENST00000425428 UBE2D1P51668 147 aa6.8□□□□□ -1.32
CD44-207ENST00000425428 GAGE12HA6NDE8 117 aa6.8□□□□□ -1.32
CD44-207ENST00000425428 COX7A2LO14548 114 aa6.8□□□□□ -1.32
CD44-207ENST00000425428 SPATA12Q7Z6I5 190 aa6.8□□□□□ -1.32
CD44-207ENST00000425428 LINC00469Q8N7U9 141 aa6.8□□□□□ -1.32
CD44-207ENST00000425428 PLECQ15149 4684 aaKnown RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 152.7 ms