RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 EFNA4P52798 201 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 ARL17AQ8IVW1 177 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 ARFGEF3Q5TH69 2177 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 IGHV3OR15-7A0A075B7D8 119 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 HBDP02042 147 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 CD28P10747 220 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 COX6B1P14854 86 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 DAD1P61803 113 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 LOXL1Q08397 574 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-207ENST00000419472 RPP21Q9H633 154 aaKnown RBP3.47□□□□□ -1.85
VPS13A-207ENST00000419472 WNK2Q9Y3S1 2297 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 NIPBLQ6KC79 2804 aaeCLIP3.47□□□□□ -1.85
VPS13A-207ENST00000419472 J3QQQ9 107 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 IGKCP01834 107 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 IFI27P40305 119 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-207ENST00000419472 ZNF816Q0VGE8 651 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-207ENST00000419472 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-207ENST00000419472 ABCA1O95477 2261 aa3.47□□□□□ -1.85
VPS13A-207ENST00000419472 ZNF137PP52743 207 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 TMEM155Q4W5P6 130 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 GOLT1AQ6ZVE7 132 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 WDR86Q86TI4 376 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 GTSCR1Q86UQ5 136 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 MKXQ8IYA7 352 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 SLC25A29Q8N8R3 303 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 KLF14Q8TD94 323 aaPredicted RBP3.46□□□□□ -1.85
VPS13A-207ENST00000419472 PLEKHB2Q96CS7 222 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 FAM215AQ9Y5M1 114 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 U3KQK5 164 aa3.46□□□□□ -1.85
VPS13A-207ENST00000419472 CUBNO60494 3623 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 ZNF56Q15929 161 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 C15orf32Q32M92 178 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 HIGD2BQ4VC39 106 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 DEFB121Q5J5C9 76 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 MIR17HGQ75NE6 70 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 AGPAT4-IT1Q9H0P7 198 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 ZNF492Q9P255 531 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 LINC00527Q9UJ94 153 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 TRBV6-6A0A0A6YYG2 114 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 TRAV13-1A0A0B4J241 112 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 LINC01546A6NGU7 62 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 DPM2O94777 84 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 IGHV3-11P01762 117 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 FCER1GP30273 86 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 RNASE13Q5GAN3 156 aaKnown RBP3.46□□□□□ -1.86
VPS13A-207ENST00000419472 FAM201AQ5SY85 155 aa3.46□□□□□ -1.86
VPS13A-207ENST00000419472 RNASE6Q93091 150 aaKnown RBP3.46□□□□□ -1.86
VPS13A-207ENST00000419472 IGHV1-18A0A0C4DH31 117 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 COL8A2P25067 703 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 PSMB8P28062 276 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 AMMECR1Q9Y4X0 333 aaPredicted RBP3.45□□□□□ -1.86
VPS13A-207ENST00000419472 IGLV11-55A0A075B6I3 123 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 TEX49A0A1B0GTD5 131 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 hADV29S1A0JD25 119 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 FGF12P61328 243 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 NDUFA11Q86Y39 141 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 C15orf56Q8N910 161 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 DEFB108BQ8NET1 73 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 DSCR8Q96T75 97 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 KRTAP4-12Q9BQ66 201 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 SHANK2-AS3Q9BTD1 123 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 CYSTM1Q9H1C7 97 aa3.45□□□□□ -1.86
VPS13A-207ENST00000419472 OTOGQ6ZRI0 2925 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 IGHV3-43A0A0B4J1X8 118 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 DEFB108AA8MXU0 73 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 H3BMM0 161 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 IGKV3-15P01624 115 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 HIST1H4AP62805 103 aaKnown RBP3.44□□□□□ -1.86
VPS13A-207ENST00000419472 TMEM170BQ5T4T1 132 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 LINC00322Q6ZN03 302 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-207ENST00000419472 C5orf38Q86SI9 138 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 UBE2WQ96B02 151 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 UPK3BQ9BT76 320 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 TRBV10-2A0A0K0K1G8 114 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 INAFM2P0DMQ5 153 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 LUZP6Q538Z0 58 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 SFTA2Q6UW10 78 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 LINC00311Q8N616 119 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 CIRBP-AS1Q8TBR5 109 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 RTL8AQ9BWD3 113 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 DPH3P1Q9H4G8 78 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 NXT2Q9NPJ8 142 aaKnown RBP3.44□□□□□ -1.86
VPS13A-207ENST00000419472 RPUSD1Q9UJJ7 312 aaKnown RBP3.44□□□□□ -1.86
VPS13A-207ENST00000419472 HIVEP1P15822 2718 aa3.44□□□□□ -1.86
VPS13A-207ENST00000419472 ATOX1O00244 68 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 ACYP1P07311 99 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 P0DMU3 169 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 FAM231AP0DMU4 169 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 FAM231CP0DMU5 169 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 IGHV1-8P0DP01 117 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 LINC00313P59037 77 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 SYCNQ0VAF6 134 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 EIF4EBP1Q13541 118 aaPredicted RBP3.43□□□□□ -1.86
VPS13A-207ENST00000419472 C1orf158Q8N1D5 194 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 NABP2Q9BQ15 211 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 ZANQ9Y493 2812 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 TLN2Q9Y4G6 2542 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 MALRD1Q5VYJ5 2156 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 TNCP24821 2201 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 IGLV1-50A0A075B6I6 118 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms