RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 IGHV3OR16-12A0A075B7B8 117 aa7.08□□□□□ -1.28
SS18-203ENST00000415083 A0A0U1RRA0 63 aa7.08□□□□□ -1.28
SS18-203ENST00000415083 TLN2Q9Y4G6 2542 aa7.08□□□□□ -1.28
SS18-203ENST00000415083 LINC01620Q4KN68 170 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 CLEC2BQ92478 149 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 CITED2Q99967 270 aaPredicted RBP7.07□□□□□ -1.28
SS18-203ENST00000415083 M0QXV9 152 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 IGHV3-53P01767 116 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 ODF3L2Q3SX64 289 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 NTM-AS1Q6ZSK4 140 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 C1orf158Q8N1D5 194 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 FAM208BQ5VWN6 2430 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 IGLV5-45A0A087WSX0 123 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 J3QLI3 93 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 RS1O15537 224 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 SNCGO76070 127 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 NHLRC4P0CG21 123 aaPredicted RBP7.07□□□□□ -1.28
SS18-203ENST00000415083 GAGE2BQ13066 116 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 DEFB114Q30KQ6 69 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 GAGE2EQ4V326 116 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 TMEM101Q96IK0 257 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 CITED1Q99966 193 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 GAGE2DQ9UEU5 116 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 NDUFA12Q9UI09 145 aa7.07□□□□□ -1.28
SS18-203ENST00000415083 ACACBO00763 2458 aa7.06□□□□□ -1.28
SS18-203ENST00000415083 WNK1Q9H4A3 2382 aa7.06□□□□□ -1.28
SS18-203ENST00000415083 TRBV30A0A0K0K1B3 111 aa7.06□□□□□ -1.28
SS18-203ENST00000415083 DSCR9P59020 149 aa7.06□□□□□ -1.28
SS18-203ENST00000415083 MIAQ16674 131 aa7.06□□□□□ -1.28
SS18-203ENST00000415083 SOSTDC1Q6X4U4 206 aa7.06□□□□□ -1.28
SS18-203ENST00000415083 TNFRSF18Q9Y5U5 241 aa7.06□□□□□ -1.28
SS18-203ENST00000415083 TMEM262E9PQX1 116 aa7.05□□□□□ -1.28
SS18-203ENST00000415083 H7C423 109 aa7.05□□□□□ -1.28
SS18-203ENST00000415083 ATXN8Q156A1 80 aa7.05□□□□□ -1.28
SS18-203ENST00000415083 TTC32Q5I0X7 151 aa7.05□□□□□ -1.28
SS18-203ENST00000415083 JMJD1CQ15652 2540 aa7.05□□□□□ -1.28
SS18-203ENST00000415083 CCDC179H3BU77 68 aa7.05□□□□□ -1.28
SS18-203ENST00000415083 GIG44P09565 113 aaPredicted RBP7.05□□□□□ -1.28
SS18-203ENST00000415083 PIK3CD-AS1Q5SR53 167 aa7.05□□□□□ -1.28
SS18-203ENST00000415083 C2orf82Q6UX34 121 aa7.05□□□□□ -1.28
SS18-203ENST00000415083 ZNF625Q96I27 306 aaPredicted RBP7.05□□□□□ -1.28
SS18-203ENST00000415083 NAV2Q8IVL1 2488 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 LINC00242Q5T6M2 205 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 C15orf53Q8NAA6 179 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 ICOSQ9Y6W8 199 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 VWFP04275 2813 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 TRAV8-4A0A0B4J246 113 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 C3orf56Q8N813 242 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 C4orf3Q8WVX3 66 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 SPANXA1Q9NS26 97 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 SONP18583 2426 aaKnown RBP7.04□□□□□ -1.28
SS18-203ENST00000415083 IGLV5-39A0A0G2JS06 123 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 PLA2G2AP14555 144 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 ZNF415Q09FC8 603 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 Q96MF0 132 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 XCL2Q9UBD3 114 aa7.04□□□□□ -1.28
SS18-203ENST00000415083 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.03□□□□□ -1.28
SS18-203ENST00000415083 NDUFV3P56181 108 aaKnown RBP7.03□□□□□ -1.28
SS18-203ENST00000415083 GAGE5Q13069 117 aa7.03□□□□□ -1.28
SS18-203ENST00000415083 GAGE6Q13070 117 aa7.03□□□□□ -1.28
SS18-203ENST00000415083 LINC01587Q99440 93 aa7.03□□□□□ -1.28
SS18-203ENST00000415083 C22orf24Q9Y442 160 aa7.03□□□□□ -1.28
SS18-203ENST00000415083 PLAC8L1A1L4L8 177 aa7.02□□□□□ -1.28
SS18-203ENST00000415083 F5H768 121 aa7.02□□□□□ -1.28
SS18-203ENST00000415083 FLNAP21333 2647 aaKnown RBP7.02□□□□□ -1.29
SS18-203ENST00000415083 TRBV10-2A0A0K0K1G8 114 aa7.02□□□□□ -1.29
SS18-203ENST00000415083 RPL13AP40429 203 aaKnown RBP7.02□□□□□ -1.29
SS18-203ENST00000415083 UBE2WQ96B02 151 aa7.02□□□□□ -1.29
SS18-203ENST00000415083 NDUFA1O15239 70 aa7.02□□□□□ -1.29
SS18-203ENST00000415083 FAM19A3Q7Z5A8 133 aa7.02□□□□□ -1.29
SS18-203ENST00000415083 SMIM1B2RUZ4 78 aa7.01□□□□□ -1.29
SS18-203ENST00000415083 TIRAPP58753 221 aa7.01□□□□□ -1.29
SS18-203ENST00000415083 Q6ZTI0 123 aa7.01□□□□□ -1.29
SS18-203ENST00000415083 ESM1Q9NQ30 184 aa7.01□□□□□ -1.29
SS18-203ENST00000415083 IFITM1P13164 125 aa7.01□□□□□ -1.29
SS18-203ENST00000415083 C11orf44Q8N8P7 122 aa7.01□□□□□ -1.29
SS18-203ENST00000415083 WFDC10AQ9H1F0 79 aa7.01□□□□□ -1.29
SS18-203ENST00000415083 DNAJC30Q96LL9 226 aa7□□□□□ -1.29
SS18-203ENST00000415083 LOC100131303A0A0U1RQF7 123 aa7□□□□□ -1.29
SS18-203ENST00000415083 LST1O00453 97 aa7□□□□□ -1.29
SS18-203ENST00000415083 TIMM17BO60830 172 aa7□□□□□ -1.29
SS18-203ENST00000415083 LINC00308Q8TCZ7 52 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 INSP01308 110 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 GAGE12JA6NER3 117 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 GAGE7O76087 117 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 GAGE12FP0CL80 117 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 GAGE12GP0CL81 117 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 GAGE12IP0CL82 117 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 GAGE4Q13068 117 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 Q9H8V8 135 aa6.99□□□□□ -1.29
SS18-203ENST00000415083 COX6CP09669 75 aa6.98□□□□□ -1.29
SS18-203ENST00000415083 NBEAL2Q6ZNJ1 2754 aa6.98□□□□□ -1.29
SS18-203ENST00000415083 DEFB121Q5J5C9 76 aa6.98□□□□□ -1.29
SS18-203ENST00000415083 CHCHD5Q9BSY4 110 aa6.98□□□□□ -1.29
SS18-203ENST00000415083 PEMTQ9UBM1 199 aa6.98□□□□□ -1.29
SS18-203ENST00000415083 TRGV1A0A0A0MS02 117 aa6.98□□□□□ -1.29
SS18-203ENST00000415083 CDC42SE2Q9NRR3 84 aa6.98□□□□□ -1.29
SS18-203ENST00000415083 A0A1W2PRX2 142 aa6.97□□□□□ -1.29
SS18-203ENST00000415083 DEFB113Q30KQ7 82 aa6.97□□□□□ -1.29
SS18-203ENST00000415083 KHDC1LQ5JSQ8 128 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms