RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 COX7BP24311 80 aa13.47□□□□□ -0.25
COL18A1-204ENST00000400337 MAPKAPK5-AS1Q8N8E1 139 aa13.47□□□□□ -0.25
COL18A1-204ENST00000400337 Q8N976 141 aa13.47□□□□□ -0.25
COL18A1-204ENST00000400337 H7C423 109 aa13.47□□□□□ -0.25
COL18A1-204ENST00000400337 AVPP01185 164 aa13.47□□□□□ -0.25
COL18A1-204ENST00000400337 WFDC10AQ9H1F0 79 aa13.47□□□□□ -0.25
COL18A1-204ENST00000400337 LRP4O75096 1905 aa13.47□□□□□ -0.25
COL18A1-204ENST00000400337 TRBV6-4A0A1B0GX49 114 aa13.46□□□□□ -0.25
COL18A1-204ENST00000400337 PTPRSQ13332 1948 aa13.46□□□□□ -0.25
COL18A1-204ENST00000400337 TRBV27A0A0K0K1C4 114 aa13.46□□□□□ -0.25
COL18A1-204ENST00000400337 NDUFB1O75438 58 aa13.46□□□□□ -0.25
COL18A1-204ENST00000400337 C14orf132Q9NPU4 83 aa13.45□□□□□ -0.26
COL18A1-204ENST00000400337 PRM2P04554 102 aa13.45□□□□□ -0.26
COL18A1-204ENST00000400337 MIFP14174 115 aa13.45□□□□□ -0.26
COL18A1-204ENST00000400337 KLLNB2CW77 178 aa13.45□□□□□ -0.26
COL18A1-204ENST00000400337 NRACQ8N912 160 aa13.44□□□□□ -0.26
COL18A1-204ENST00000400337 CRYGDP07320 174 aa13.44□□□□□ -0.26
COL18A1-204ENST00000400337 BBC3Q96PG8 261 aaPredicted RBP13.43□□□□□ -0.26
COL18A1-204ENST00000400337 TRBV6-5A0A0K0K1A5 114 aa13.43□□□□□ -0.26
COL18A1-204ENST00000400337 DCANP1Q8TF63 244 aa13.43□□□□□ -0.26
COL18A1-204ENST00000400337 SHISA2Q6UWI4 295 aa13.43□□□□□ -0.26
COL18A1-204ENST00000400337 HILS1P60008 231 aa13.42□□□□□ -0.26
COL18A1-204ENST00000400337 PIK3CD-AS1Q5SR53 167 aa13.42□□□□□ -0.26
COL18A1-204ENST00000400337 CENPFP49454 3210 aa13.42□□□□□ -0.26
COL18A1-204ENST00000400337 MP68P56378 58 aa13.42□□□□□ -0.26
COL18A1-204ENST00000400337 PLA2G2AP14555 144 aa13.42□□□□□ -0.26
COL18A1-204ENST00000400337 LINC00308Q8TCZ7 52 aa13.42□□□□□ -0.26
COL18A1-204ENST00000400337 GAS8-AS1O95177 125 aa13.41□□□□□ -0.26
COL18A1-204ENST00000400337 TSHBP01222 138 aa13.41□□□□□ -0.26
COL18A1-204ENST00000400337 PRB2P02812 416 aaPredicted RBP13.41□□□□□ -0.26
COL18A1-204ENST00000400337 SPATA25Q9BR10 227 aa13.4□□□□□ -0.26
COL18A1-204ENST00000400337 A8MZ25 164 aa13.4□□□□□ -0.26
COL18A1-204ENST00000400337 IBA57-AS1B1ANH7 110 aa13.39□□□□□ -0.27
COL18A1-204ENST00000400337 PYGO1Q9Y3Y4 419 aa13.39□□□□□ -0.27
COL18A1-204ENST00000400337 CEP295Q9C0D2 2601 aa13.39□□□□□ -0.27
COL18A1-204ENST00000400337 SPANXB1Q9NS25 103 aaPredicted RBP13.39□□□□□ -0.27
COL18A1-204ENST00000400337 SMIM20Q8N5G0 67 aa13.39□□□□□ -0.27
COL18A1-204ENST00000400337 HIGD2AQ9BW72 106 aa13.39□□□□□ -0.27
COL18A1-204ENST00000400337 XAGE1AQ9HD64 81 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 C14orf177Q52M58 125 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 PDE6GP18545 87 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 RBX1P62877 108 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 C9orf85Q96MD7 179 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 LOC100131303A0A0U1RQF7 123 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 KRTAP10-9P60411 292 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 LINC00643Q86TS7 51 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 TEX49A0A1B0GTD5 131 aa13.38□□□□□ -0.27
COL18A1-204ENST00000400337 WFDC9Q8NEX5 89 aa13.37□□□□□ -0.27
COL18A1-204ENST00000400337 EDN2P20800 178 aa13.37□□□□□ -0.27
COL18A1-204ENST00000400337 ATG2AQ2TAZ0 1938 aa13.37□□□□□ -0.27
COL18A1-204ENST00000400337 A0A1W2PPR1 153 aa13.36□□□□□ -0.27
COL18A1-204ENST00000400337 POLR2KP53803 58 aaKnown RBP13.36□□□□□ -0.27
COL18A1-204ENST00000400337 JMJD1CQ15652 2540 aa13.36□□□□□ -0.27
COL18A1-204ENST00000400337 DOPEY1Q5JWR5 2465 aa13.36□□□□□ -0.27
COL18A1-204ENST00000400337 C5orf47Q569G3 176 aa13.36□□□□□ -0.27
COL18A1-204ENST00000400337 GOLGB1Q14789 3259 aaKnown RBP13.35□□□□□ -0.27
COL18A1-204ENST00000400337 B9D2Q9BPU9 175 aa13.35□□□□□ -0.27
COL18A1-204ENST00000400337 SLPIP03973 132 aa13.34□□□□□ -0.27
COL18A1-204ENST00000400337 MRPS12O15235 138 aaKnown RBP13.34□□□□□ -0.27
COL18A1-204ENST00000400337 TRIAP1O43715 76 aa13.34□□□□□ -0.27
COL18A1-204ENST00000400337 TLN2Q9Y4G6 2542 aa13.34□□□□□ -0.27
COL18A1-204ENST00000400337 C4orf48Q5BLP8 95 aa13.34□□□□□ -0.27
COL18A1-204ENST00000400337 UBE2D4Q9Y2X8 147 aa13.33□□□□□ -0.28
COL18A1-204ENST00000400337 RNF183Q96D59 192 aa13.32□□□□□ -0.28
COL18A1-204ENST00000400337 CNFNQ9BYD5 112 aa13.32□□□□□ -0.28
COL18A1-204ENST00000400337 CHKB-CPT1BH3BT56 60 aa13.31□□□□□ -0.28
COL18A1-204ENST00000400337 SMR3AQ99954 134 aa13.31□□□□□ -0.28
COL18A1-204ENST00000400337 LINC00526Q96FQ7 95 aa13.31□□□□□ -0.28
COL18A1-204ENST00000400337 H0Y9J4 135 aa13.31□□□□□ -0.28
COL18A1-204ENST00000400337 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.31□□□□□ -0.28
COL18A1-204ENST00000400337 USP9XQ93008 2570 aaPredicted RBP13.31□□□□□ -0.28
COL18A1-204ENST00000400337 MT-ATP8P03928 68 aa13.3□□□□□ -0.28
COL18A1-204ENST00000400337 ANKRD11Q6UB99 2663 aaPredicted RBP13.3□□□□□ -0.28
COL18A1-204ENST00000400337 TRAV23DV6A0A075B6W5 121 aa13.3□□□□□ -0.28
COL18A1-204ENST00000400337 A0A096LNI7 61 aa13.3□□□□□ -0.28
COL18A1-204ENST00000400337 ABCA12Q86UK0 2595 aa13.3□□□□□ -0.28
COL18A1-204ENST00000400337 SYCNQ0VAF6 134 aa13.3□□□□□ -0.28
COL18A1-204ENST00000400337 KPRPQ5T749 579 aaPredicted RBP13.3□□□□□ -0.28
COL18A1-204ENST00000400337 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.3□□□□□ -0.28
COL18A1-204ENST00000400337 C2orf91Q6ZV80 131 aa13.3□□□□□ -0.28
COL18A1-204ENST00000400337 FAM19A1Q7Z5A9 133 aa13.3□□□□□ -0.28
COL18A1-204ENST00000400337 CD164L2Q6UWJ8 174 aa13.29□□□□□ -0.28
COL18A1-204ENST00000400337 UPK3BQ9BT76 320 aa13.29□□□□□ -0.28
COL18A1-204ENST00000400337 TRAV10A0A0B4J240 114 aa13.29□□□□□ -0.28
COL18A1-204ENST00000400337 TRBV30A0A0K0K1B3 111 aa13.29□□□□□ -0.28
COL18A1-204ENST00000400337 J3KT08 172 aa13.29□□□□□ -0.28
COL18A1-204ENST00000400337 C6orf99Q4VX62 202 aa13.29□□□□□ -0.28
COL18A1-204ENST00000400337 BPY2O14599 106 aa13.28□□□□□ -0.28
COL18A1-204ENST00000400337 ODF3L2Q3SX64 289 aa13.28□□□□□ -0.28
COL18A1-204ENST00000400337 FAM19A5Q7Z5A7 132 aaPredicted RBP13.28□□□□□ -0.28
COL18A1-204ENST00000400337 A0A087WZ39 114 aa13.28□□□□□ -0.28
COL18A1-204ENST00000400337 KIR2DL5BQ8NHK3 375 aa13.28□□□□□ -0.28
COL18A1-204ENST00000400337 LINC00959A0A1B0GUT2 108 aa13.27□□□□□ -0.28
COL18A1-204ENST00000400337 CLUHP3Q96NS8 147 aa13.27□□□□□ -0.28
COL18A1-204ENST00000400337 SDIM1Q6ZPB5 146 aa13.27□□□□□ -0.29
COL18A1-204ENST00000400337 ZFYVE26Q68DK2 2539 aa13.26□□□□□ -0.29
COL18A1-204ENST00000400337 MRPS36P82909 103 aaKnown RBP13.26□□□□□ -0.29
COL18A1-204ENST00000400337 UBE2D1P51668 147 aa13.26□□□□□ -0.29
COL18A1-204ENST00000400337 LELP1Q5T871 98 aa13.26□□□□□ -0.29
COL18A1-204ENST00000400337 OXLD1Q5BKU9 147 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms