RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 DSCAMO60469 2012 aa9.53□□□□□ -0.88
CCDC88C-204ENST00000389857 MSMPQ1L6U9 139 aa9.53□□□□□ -0.88
CCDC88C-204ENST00000389857 CREBBPQ92793 2442 aa9.53□□□□□ -0.88
CCDC88C-204ENST00000389857 IGKV2-28A0A075B6P5 120 aa9.52□□□□□ -0.88
CCDC88C-204ENST00000389857 IGKV2D-28P01615 120 aa9.52□□□□□ -0.88
CCDC88C-204ENST00000389857 PYGO1Q9Y3Y4 419 aa9.52□□□□□ -0.88
CCDC88C-204ENST00000389857 SPINK6Q6UWN8 80 aa9.52□□□□□ -0.88
CCDC88C-204ENST00000389857 ALPK3Q96L96 1907 aa9.52□□□□□ -0.89
CCDC88C-204ENST00000389857 GDF5OSQ5U4N7 250 aa9.52□□□□□ -0.89
CCDC88C-204ENST00000389857 HRCT1Q6UXD1 115 aa9.52□□□□□ -0.89
CCDC88C-204ENST00000389857 FAM19A3Q7Z5A8 133 aa9.52□□□□□ -0.89
CCDC88C-204ENST00000389857 Q8N9L7 120 aa9.52□□□□□ -0.89
CCDC88C-204ENST00000389857 MED12LQ86YW9 2145 aa9.51□□□□□ -0.89
CCDC88C-204ENST00000389857 TRBV6-5A0A0K0K1A5 114 aa9.51□□□□□ -0.89
CCDC88C-204ENST00000389857 A0A1W2PNU3 283 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-204ENST00000389857 A6NED7 52 aa9.51□□□□□ -0.89
CCDC88C-204ENST00000389857 HCFC1P51610 2035 aa9.51□□□□□ -0.89
CCDC88C-204ENST00000389857 LELP1Q5T871 98 aa9.51□□□□□ -0.89
CCDC88C-204ENST00000389857 LINC00482Q8N8I6 264 aa9.51□□□□□ -0.89
CCDC88C-204ENST00000389857 ZFAND3Q9H8U3 227 aa9.5□□□□□ -0.89
CCDC88C-204ENST00000389857 BBC3Q96PG8 261 aaPredicted RBP9.5□□□□□ -0.89
CCDC88C-204ENST00000389857 IMUPQ9GZP8 106 aa9.5□□□□□ -0.89
CCDC88C-204ENST00000389857 Q6ZSV7 163 aa9.49□□□□□ -0.89
CCDC88C-204ENST00000389857 PPDPFQ9H3Y8 114 aa9.49□□□□□ -0.89
CCDC88C-204ENST00000389857 C19orf84I3L1E1 186 aa9.49□□□□□ -0.89
CCDC88C-204ENST00000389857 NBASA2RRP1 2371 aa9.49□□□□□ -0.89
CCDC88C-204ENST00000389857 KPRPQ5T749 579 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-204ENST00000389857 A0A0U1RQV1 116 aa9.49□□□□□ -0.89
CCDC88C-204ENST00000389857 EBI3Q14213 229 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 SERP2Q8N6R1 65 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 TRBV27A0A0K0K1C4 114 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 PLAC8L1A1L4L8 177 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 MUC7Q8TAX7 377 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 RNF185Q96GF1 192 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 PSMG3-AS1Q96PY0 264 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 UBE2D2P62837 147 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 WFDC13Q8IUB5 93 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 IGLV9-49A0A0B4J1Y8 123 aa9.48□□□□□ -0.89
CCDC88C-204ENST00000389857 LTBP2Q14767 1821 aa9.47□□□□□ -0.89
CCDC88C-204ENST00000389857 IGLV2-18A0A075B6J9 118 aa9.47□□□□□ -0.89
CCDC88C-204ENST00000389857 RBX1P62877 108 aa9.47□□□□□ -0.89
CCDC88C-204ENST00000389857 C10orf25Q5T742 122 aa9.47□□□□□ -0.89
CCDC88C-204ENST00000389857 COL4A4P53420 1690 aaPredicted RBP9.47□□□□□ -0.89
CCDC88C-204ENST00000389857 CACNA1HO95180 2353 aa9.47□□□□□ -0.89
CCDC88C-204ENST00000389857 FREM1Q5H8C1 2179 aa9.47□□□□□ -0.89
CCDC88C-204ENST00000389857 MRPS36P82909 103 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-204ENST00000389857 PROK1P58294 105 aa9.46□□□□□ -0.89
CCDC88C-204ENST00000389857 SNURFQ9Y675 71 aa9.46□□□□□ -0.89
CCDC88C-204ENST00000389857 Q8N976 141 aa9.46□□□□□ -0.89
CCDC88C-204ENST00000389857 TSHBP01222 138 aa9.46□□□□□ -0.9
CCDC88C-204ENST00000389857 MAPKAPK5-AS1Q8N8E1 139 aa9.46□□□□□ -0.9
CCDC88C-204ENST00000389857 EML5Q05BV3 1969 aa9.46□□□□□ -0.9
CCDC88C-204ENST00000389857 M0R2N4 97 aa9.46□□□□□ -0.9
CCDC88C-204ENST00000389857 Q6ZQY7 126 aa9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 CRIP1P50238 77 aa9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 EIF4EBP1Q13541 118 aaPredicted RBP9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 LINC00959A0A1B0GUT2 108 aa9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 LY6G6DO95868 133 aa9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 RPL37AP8A6NKH3 93 aa9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 MRPS12O15235 138 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 NDUFA7O95182 113 aa9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 LY6G6CO95867 125 aa9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 PLA2G5P39877 138 aa9.45□□□□□ -0.9
CCDC88C-204ENST00000389857 CLUHP3Q96NS8 147 aa9.44□□□□□ -0.9
CCDC88C-204ENST00000389857 SMIM11BQ8TCY0 68 aa9.44□□□□□ -0.9
CCDC88C-204ENST00000389857 ZNF702PQ9H963 129 aa9.44□□□□□ -0.9
CCDC88C-204ENST00000389857 TP73-AS1Q9UF72 201 aa9.44□□□□□ -0.9
CCDC88C-204ENST00000389857 MBD6Q96DN6 1003 aa9.44□□□□□ -0.9
CCDC88C-204ENST00000389857 FAM30AQ9NZY2 134 aa9.44□□□□□ -0.9
CCDC88C-204ENST00000389857 Q6ZVQ6 151 aa9.43□□□□□ -0.9
CCDC88C-204ENST00000389857 ZNF73O43830 326 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-204ENST00000389857 C11orf71Q6IPW1 123 aa9.43□□□□□ -0.9
CCDC88C-204ENST00000389857 LST1O00453 97 aa9.42□□□□□ -0.9
CCDC88C-204ENST00000389857 BRWD1-AS2P59051 145 aa9.42□□□□□ -0.9
CCDC88C-204ENST00000389857 NRACQ8N912 160 aa9.42□□□□□ -0.9
CCDC88C-204ENST00000389857 Q8IZM0 81 aa9.42□□□□□ -0.9
CCDC88C-204ENST00000389857 IGHV4-30-4P0DP06 118 aa9.41□□□□□ -0.9
CCDC88C-204ENST00000389857 C1orf229Q6ZS94 237 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-204ENST00000389857 ZNF843Q8N446 348 aa9.41□□□□□ -0.9
CCDC88C-204ENST00000389857 EP400Q96L91 3159 aa9.41□□□□□ -0.9
CCDC88C-204ENST00000389857 WISP2O76076 250 aa9.41□□□□□ -0.9
CCDC88C-204ENST00000389857 ATG2AQ2TAZ0 1938 aa9.41□□□□□ -0.9
CCDC88C-204ENST00000389857 RPL28P46779 137 aaKnown RBP9.4□□□□□ -0.9
CCDC88C-204ENST00000389857 COL4A3Q01955 1670 aa9.4□□□□□ -0.9
CCDC88C-204ENST00000389857 LOC100131303A0A0U1RQF7 123 aa9.4□□□□□ -0.91
CCDC88C-204ENST00000389857 RNASE3P12724 160 aaKnown RBP9.4□□□□□ -0.91
CCDC88C-204ENST00000389857 WNK1Q9H4A3 2382 aa9.39□□□□□ -0.91
CCDC88C-204ENST00000389857 COX7CP15954 63 aa9.39□□□□□ -0.91
CCDC88C-204ENST00000389857 MRGPRG-AS1Q2M3A8 158 aa9.39□□□□□ -0.91
CCDC88C-204ENST00000389857 A8MZ25 164 aa9.39□□□□□ -0.91
CCDC88C-204ENST00000389857 LINC00526Q96FQ7 95 aa9.39□□□□□ -0.91
CCDC88C-204ENST00000389857 NUPR2A6NF83 97 aa9.38□□□□□ -0.91
CCDC88C-204ENST00000389857 C10orf99Q6UWK7 81 aa9.38□□□□□ -0.91
CCDC88C-204ENST00000389857 PCNX3Q9H6A9 2034 aa9.38□□□□□ -0.91
CCDC88C-204ENST00000389857 KLLNB2CW77 178 aa9.38□□□□□ -0.91
CCDC88C-204ENST00000389857 IGLV2-11P01706 119 aa9.38□□□□□ -0.91
CCDC88C-204ENST00000389857 Q6JHZ5 121 aa9.38□□□□□ -0.91
CCDC88C-204ENST00000389857 ZNF295-AS1Q8N0V1 137 aa9.37□□□□□ -0.91
CCDC88C-204ENST00000389857 LINC01006Q8NI28 216 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 141.3 ms