RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 VCX2Q9H322 139 aa18.55■□□□□ 0.56
MSX1-201ENST00000382723 CST9LQ9H4G1 147 aa18.55■□□□□ 0.56
MSX1-201ENST00000382723 CHTOPQ9Y3Y2 248 aaKnown RBP18.55■□□□□ 0.56
MSX1-201ENST00000382723 TIMM21Q9BVV7 248 aa18.54■□□□□ 0.56
MSX1-201ENST00000382723 PRKDCP78527 4128 aaKnown RBP18.54■□□□□ 0.56
MSX1-201ENST00000382723 MAJINQ3KP22 176 aa18.53■□□□□ 0.56
MSX1-201ENST00000382723 MRPL52Q86TS9 123 aaKnown RBP18.53■□□□□ 0.56
MSX1-201ENST00000382723 H7C423 109 aa18.53■□□□□ 0.56
MSX1-201ENST00000382723 PAPPA-AS1Q5QFB9 102 aa18.53■□□□□ 0.56
MSX1-201ENST00000382723 SMAGPQ0VAQ4 97 aa18.51■□□□□ 0.55
MSX1-201ENST00000382723 OR5A1Q8NGJ0 315 aa18.51■□□□□ 0.55
MSX1-201ENST00000382723 VAMP8Q9BV40 100 aa18.51■□□□□ 0.55
MSX1-201ENST00000382723 TMEM262E9PQX1 116 aa18.51■□□□□ 0.55
MSX1-201ENST00000382723 LYPD5Q6UWN5 251 aa18.51■□□□□ 0.55
MSX1-201ENST00000382723 TMEM101Q96IK0 257 aa18.51■□□□□ 0.55
MSX1-201ENST00000382723 PAM16Q9Y3D7 125 aa18.51■□□□□ 0.55
MSX1-201ENST00000382723 F8VRH5 84 aa18.5■□□□□ 0.55
MSX1-201ENST00000382723 NPSP0C0P6 89 aa18.5■□□□□ 0.55
MSX1-201ENST00000382723 DPM2O94777 84 aa18.49■□□□□ 0.55
MSX1-201ENST00000382723 AMELXQ99217 191 aa18.49■□□□□ 0.55
MSX1-201ENST00000382723 CSDC2Q9Y534 153 aaKnown RBP18.49■□□□□ 0.55
MSX1-201ENST00000382723 STAB2Q8WWQ8 2551 aa18.49■□□□□ 0.55
MSX1-201ENST00000382723 hDV102S1A0JD36 115 aa18.49■□□□□ 0.55
MSX1-201ENST00000382723 IGKCP01834 107 aa18.49■□□□□ 0.55
MSX1-201ENST00000382723 MRPS36P82909 103 aaKnown RBP18.49■□□□□ 0.55
MSX1-201ENST00000382723 LELP1Q5T871 98 aa18.48■□□□□ 0.55
MSX1-201ENST00000382723 TRAV9-2A0A087WT02 112 aa18.47■□□□□ 0.55
MSX1-201ENST00000382723 IGLL5B9A064 214 aa18.47■□□□□ 0.55
MSX1-201ENST00000382723 C14orf144Q96I85 54 aa18.47■□□□□ 0.55
MSX1-201ENST00000382723 CDC42SE2Q9NRR3 84 aa18.47■□□□□ 0.55
MSX1-201ENST00000382723 IGLV4-60A0A075B6I1 120 aa18.46■□□□□ 0.55
MSX1-201ENST00000382723 ZNF25P17030 456 aaPredicted RBP18.46■□□□□ 0.55
MSX1-201ENST00000382723 PLNP26678 52 aa18.45■□□□□ 0.54
MSX1-201ENST00000382723 IGLV4-69A0A075B6H9 119 aa18.45■□□□□ 0.54
MSX1-201ENST00000382723 SPATA45Q537H7 98 aa18.44■□□□□ 0.54
MSX1-201ENST00000382723 MPV17L2Q567V2 206 aa18.44■□□□□ 0.54
MSX1-201ENST00000382723 C2orf88Q9BSF0 95 aa18.44■□□□□ 0.54
MSX1-201ENST00000382723 ESRGQ1W209 222 aa18.43■□□□□ 0.54
MSX1-201ENST00000382723 STPG4Q8N801 248 aa18.43■□□□□ 0.54
MSX1-201ENST00000382723 C15orf53Q8NAA6 179 aa18.43■□□□□ 0.54
MSX1-201ENST00000382723 HSBP1L1C9JCN9 74 aa18.43■□□□□ 0.54
MSX1-201ENST00000382723 RBX1P62877 108 aa18.43■□□□□ 0.54
MSX1-201ENST00000382723 TCTAP57738 103 aa18.42■□□□□ 0.54
MSX1-201ENST00000382723 TIRAPP58753 221 aa18.42■□□□□ 0.54
MSX1-201ENST00000382723 A0A0J9YXV3 536 aa18.41■□□□□ 0.54
MSX1-201ENST00000382723 C11orf86A6NJI1 115 aa18.41■□□□□ 0.54
MSX1-201ENST00000382723 Q8N3U1 123 aa18.41■□□□□ 0.54
MSX1-201ENST00000382723 TRAV8-6A0A0B4J262 113 aa18.39■□□□□ 0.53
MSX1-201ENST00000382723 A0A1B0GUV1 79 aa18.39■□□□□ 0.53
MSX1-201ENST00000382723 CHAC1Q9BUX1 264 aa18.39■□□□□ 0.53
MSX1-201ENST00000382723 TRAV13-1A0A0B4J241 112 aa18.38■□□□□ 0.53
MSX1-201ENST00000382723 IGKV3OR2-268A0A0C4DH90 116 aa18.38■□□□□ 0.53
MSX1-201ENST00000382723 UBE2D1P51668 147 aa18.37■□□□□ 0.53
MSX1-201ENST00000382723 IGLC3P0DOY3 106 aa18.37■□□□□ 0.53
MSX1-201ENST00000382723 ANKRD39Q53RE8 183 aa18.36■□□□□ 0.53
MSX1-201ENST00000382723 TMEM170BQ5T4T1 132 aa18.35■□□□□ 0.53
MSX1-201ENST00000382723 NFE4Q86UQ8 179 aa18.35■□□□□ 0.53
MSX1-201ENST00000382723 WFDC10BQ8IUB3 73 aa18.35■□□□□ 0.53
MSX1-201ENST00000382723 FBN3Q75N90 2809 aa18.35■□□□□ 0.53
MSX1-201ENST00000382723 CLPSL2Q6UWE3 100 aa18.33■□□□□ 0.53
MSX1-201ENST00000382723 ANGP03950 147 aaKnown RBP18.33■□□□□ 0.52
MSX1-201ENST00000382723 TINCRA0A1B0GVN0 87 aa18.32■□□□□ 0.52
MSX1-201ENST00000382723 GEMIN7Q9H840 131 aaKnown RBP18.31■□□□□ 0.52
MSX1-201ENST00000382723 IGHV3-30P01768 117 aa18.31■□□□□ 0.52
MSX1-201ENST00000382723 IGHV3-33P01772 117 aa18.31■□□□□ 0.52
MSX1-201ENST00000382723 IGHV3-30-3P0DP02 117 aa18.31■□□□□ 0.52
MSX1-201ENST00000382723 IGHV3-30-5P0DP03 117 aa18.31■□□□□ 0.52
MSX1-201ENST00000382723 LINC00269Q8N2A0 174 aa18.31■□□□□ 0.52
MSX1-201ENST00000382723 ZNF22P17026 224 aaPredicted RBP18.3■□□□□ 0.52
MSX1-201ENST00000382723 LINC00242Q5T6M2 205 aa18.3■□□□□ 0.52
MSX1-201ENST00000382723 COX6A2Q02221 97 aa18.29■□□□□ 0.52
MSX1-201ENST00000382723 MIEN1Q9BRT3 115 aa18.29■□□□□ 0.52
MSX1-201ENST00000382723 LINC00588Q9Y4M8 146 aa18.29■□□□□ 0.52
MSX1-201ENST00000382723 NMUP48645 174 aa18.28■□□□□ 0.52
MSX1-201ENST00000382723 LINC00469Q8N7U9 141 aa18.28■□□□□ 0.52
MSX1-201ENST00000382723 CCL18P55774 89 aa18.27■□□□□ 0.52
MSX1-201ENST00000382723 IGKV2D-26A0A0A0MRZ7 120 aa18.27■□□□□ 0.51
MSX1-201ENST00000382723 NUPR2A6NF83 97 aa18.26■□□□□ 0.51
MSX1-201ENST00000382723 KLK12Q9UKR0 248 aa18.26■□□□□ 0.51
MSX1-201ENST00000382723 LINC00959A0A1B0GUT2 108 aa18.25■□□□□ 0.51
MSX1-201ENST00000382723 HERVK_113P63121 156 aa18.25■□□□□ 0.51
MSX1-201ENST00000382723 FAM19A3Q7Z5A8 133 aa18.25■□□□□ 0.51
MSX1-201ENST00000382723 SEC11AP67812 179 aa18.25■□□□□ 0.51
MSX1-201ENST00000382723 REG3AQ06141 175 aa18.25■□□□□ 0.51
MSX1-201ENST00000382723 APLNQ9ULZ1 77 aa18.25■□□□□ 0.51
MSX1-201ENST00000382723 EREGO14944 169 aa18.24■□□□□ 0.51
MSX1-201ENST00000382723 CDKN2A-AS1Q9UH64 79 aa18.24■□□□□ 0.51
MSX1-201ENST00000382723 HERVK_113P61574 105 aa18.23■□□□□ 0.51
MSX1-201ENST00000382723 TP73-AS1Q9UF72 201 aa18.23■□□□□ 0.51
MSX1-201ENST00000382723 KLK5Q9Y337 293 aaPredicted RBP18.23■□□□□ 0.51
MSX1-201ENST00000382723 MRPS16Q9Y3D3 137 aaKnown RBP18.23■□□□□ 0.51
MSX1-201ENST00000382723 IGHV3-64A0A075B6Q5 118 aa18.23■□□□□ 0.51
MSX1-201ENST00000382723 TMEM223A0PJW6 202 aa18.23■□□□□ 0.51
MSX1-201ENST00000382723 SS18Q15532 418 aa18.21■□□□□ 0.51
MSX1-201ENST00000382723 E9PLD3 99 aa18.21■□□□□ 0.51
MSX1-201ENST00000382723 PCP2Q8IVA1 136 aa18.21■□□□□ 0.51
MSX1-201ENST00000382723 SNHG12Q9BXW3 62 aa18.21■□□□□ 0.51
MSX1-201ENST00000382723 IGLV5-45A0A087WSX0 123 aa18.2■□□□□ 0.5
MSX1-201ENST00000382723 SPINK8P0C7L1 97 aa18.2■□□□□ 0.5
MSX1-201ENST00000382723 TTTY13Q9BZ97 58 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms