RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 UBE2D3P61077 147 aa7.49□□□□□ -1.21
POLR2J3-201ENST00000379340 UBE2D2P62837 147 aa7.49□□□□□ -1.21
POLR2J3-201ENST00000379340 PHLDA1Q8WV24 401 aaPredicted RBP7.49□□□□□ -1.21
POLR2J3-201ENST00000379340 FAM104AQ969W3 186 aa7.49□□□□□ -1.21
POLR2J3-201ENST00000379340 NHP2Q9NX24 153 aaKnown RBP7.49□□□□□ -1.21
POLR2J3-201ENST00000379340 CMYA5Q8N3K9 4069 aa7.48□□□□□ -1.21
POLR2J3-201ENST00000379340 A0A1B0GWB2 263 aa7.48□□□□□ -1.21
POLR2J3-201ENST00000379340 A0A1W2PPM0 123 aa7.48□□□□□ -1.21
POLR2J3-201ENST00000379340 GAGE10A6NGK3 116 aa7.48□□□□□ -1.21
POLR2J3-201ENST00000379340 SHISA2Q6UWI4 295 aa7.48□□□□□ -1.21
POLR2J3-201ENST00000379340 OR5A1Q8NGJ0 315 aa7.48□□□□□ -1.21
POLR2J3-201ENST00000379340 GTSF1LQ9H1H1 148 aa7.48□□□□□ -1.21
POLR2J3-201ENST00000379340 Q9UF83 564 aa7.48□□□□□ -1.21
POLR2J3-201ENST00000379340 TRGV2A0A075B6R0 118 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 IGHV3-38A0A0C4DH36 116 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 A0A0J9YY99 117 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 IGKV2-29A2NJV5 120 aaPredicted RBP7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 SMIM9A6NGZ8 99 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 K7EP34 96 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 FABP2P12104 132 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 SRSF9Q13242 221 aaKnown RBP eCLIP7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 C12orf74Q32Q52 190 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 SLC25A29Q8N8R3 303 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 KIR2DL5BQ8NHK3 375 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 RAB37Q96AX2 223 aa7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 CSDC2Q9Y534 153 aaKnown RBP7.47□□□□□ -1.21
POLR2J3-201ENST00000379340 GAGE12BA1L429 117 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 H7C423 109 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 GAGE7O76087 117 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 GAGE12FP0CL80 117 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 GAGE12GP0CL81 117 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 GAGE12IP0CL82 117 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 TSPEAR-AS2P59090 65 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 SAMD5Q5TGI4 173 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 DGAT2L7PQ6IED9 249 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 SVIPQ8NHG7 77 aa7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 KMT2CQ8NEZ4 4911 aaKnown RBP7.46□□□□□ -1.21
POLR2J3-201ENST00000379340 K7EP13 123 aa7.46□□□□□ -1.22
POLR2J3-201ENST00000379340 TIRAPP58753 221 aa7.46□□□□□ -1.22
POLR2J3-201ENST00000379340 Q6ZUT4 128 aa7.46□□□□□ -1.22
POLR2J3-201ENST00000379340 FAM19A3Q7Z5A8 133 aa7.46□□□□□ -1.22
POLR2J3-201ENST00000379340 CITED1Q99966 193 aa7.46□□□□□ -1.22
POLR2J3-201ENST00000379340 TRGV4A0A0C4DH28 118 aa7.45□□□□□ -1.22
POLR2J3-201ENST00000379340 IGHV1-58A0A0C4DH39 117 aa7.45□□□□□ -1.22
POLR2J3-201ENST00000379340 UBE2D1P51668 147 aa7.45□□□□□ -1.22
POLR2J3-201ENST00000379340 CEMP1Q6PRD7 247 aaPredicted RBP7.45□□□□□ -1.22
POLR2J3-201ENST00000379340 SBSPONQ8IVN8 264 aa7.45□□□□□ -1.22
POLR2J3-201ENST00000379340 LINC00612Q8N6U2 182 aa7.45□□□□□ -1.22
POLR2J3-201ENST00000379340 SPCS1Q9Y6A9 102 aa7.45□□□□□ -1.22
POLR2J3-201ENST00000379340 RYR3Q15413 4870 aa7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 IGLV5-45A0A087WSX0 123 aa7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 GAGE12JA6NER3 117 aa7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 IGLL5B9A064 214 aa7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 TMEM238C9JI98 176 aa7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 GAGE4Q13068 117 aa7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 GAGE5Q13069 117 aa7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 GAGE13Q4V321 117 aa7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 GEMIN7Q9H840 131 aaKnown RBP7.44□□□□□ -1.22
POLR2J3-201ENST00000379340 K7ERJ3 54 aa7.43□□□□□ -1.22
POLR2J3-201ENST00000379340 IGHV3-30-3P0DP02 117 aa7.43□□□□□ -1.22
POLR2J3-201ENST00000379340 HERVK_113P63121 156 aa7.43□□□□□ -1.22
POLR2J3-201ENST00000379340 TMEM243Q9BU79 118 aa7.43□□□□□ -1.22
POLR2J3-201ENST00000379340 UBE2L6O14933 153 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 IGHV3-30P01768 117 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 IGHV3-30-5P0DP03 117 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 APOC4P55056 127 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 FHL2Q14192 279 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 NTM-AS1Q6ZSK4 140 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 TMEM101Q96IK0 257 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 VSIG2Q96IQ7 327 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 LINC00694P0DN24 101 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 RNASE13Q5GAN3 156 aaKnown RBP7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 NAA38Q9BRA0 125 aaKnown RBP7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 X6R8D5 127 aa7.42□□□□□ -1.22
POLR2J3-201ENST00000379340 LYRM9A8MSI8 78 aa7.41□□□□□ -1.22
POLR2J3-201ENST00000379340 WFDC9Q8NEX5 89 aa7.41□□□□□ -1.22
POLR2J3-201ENST00000379340 IGHV3-64A0A075B6Q5 118 aa7.4□□□□□ -1.22
POLR2J3-201ENST00000379340 A0A0J9YXY3 114 aa7.4□□□□□ -1.22
POLR2J3-201ENST00000379340 RPL24P83731 157 aaKnown RBP7.4□□□□□ -1.22
POLR2J3-201ENST00000379340 LYRM7Q5U5X0 104 aa7.4□□□□□ -1.22
POLR2J3-201ENST00000379340 ZFAND6Q6FIF0 208 aa7.4□□□□□ -1.22
POLR2J3-201ENST00000379340 CDC42SE2Q9NRR3 84 aa7.4□□□□□ -1.22
POLR2J3-201ENST00000379340 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.39□□□□□ -1.23
POLR2J3-201ENST00000379340 TIMM17BO60830 172 aa7.39□□□□□ -1.23
POLR2J3-201ENST00000379340 C10orf126Q8N4M7 172 aa7.39□□□□□ -1.23
POLR2J3-201ENST00000379340 NDUFA12Q9UI09 145 aa7.39□□□□□ -1.23
POLR2J3-201ENST00000379340 TRAV8-3A0A0A6YYJ7 113 aa7.38□□□□□ -1.23
POLR2J3-201ENST00000379340 SPINK8P0C7L1 97 aa7.38□□□□□ -1.23
POLR2J3-201ENST00000379340 LINC00242Q5T6M2 205 aa7.38□□□□□ -1.23
POLR2J3-201ENST00000379340 LCE2DQ5TA82 110 aaPredicted RBP7.38□□□□□ -1.23
POLR2J3-201ENST00000379340 SPANXDQ9BXN6 97 aa7.38□□□□□ -1.23
POLR2J3-201ENST00000379340 PGPEP1Q9NXJ5 209 aa7.38□□□□□ -1.23
POLR2J3-201ENST00000379340 SPANXCQ9NY87 97 aa7.38□□□□□ -1.23
POLR2J3-201ENST00000379340 CDKN2A-AS1Q9UH64 79 aa7.38□□□□□ -1.23
POLR2J3-201ENST00000379340 TRBV6-8A0A0A6YYG3 113 aa7.37□□□□□ -1.23
POLR2J3-201ENST00000379340 IGLV5-39A0A0G2JS06 123 aa7.37□□□□□ -1.23
POLR2J3-201ENST00000379340 LOC100131303A0A0U1RQF7 123 aa7.37□□□□□ -1.23
POLR2J3-201ENST00000379340 NDUFA1O15239 70 aa7.37□□□□□ -1.23
POLR2J3-201ENST00000379340 A0A0B4J2C4 111 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms