RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 C5orf47Q569G3 176 aa8.55□□□□□ -1.04
PTPRF-203ENST00000372407 EML5Q05BV3 1969 aa8.55□□□□□ -1.04
PTPRF-203ENST00000372407 TRBV27A0A0K0K1C4 114 aa8.55□□□□□ -1.04
PTPRF-203ENST00000372407 TMEM223A0PJW6 202 aa8.55□□□□□ -1.04
PTPRF-203ENST00000372407 COL4A2P08572 1712 aa8.55□□□□□ -1.04
PTPRF-203ENST00000372407 UBE2AP49459 152 aa8.54□□□□□ -1.04
PTPRF-203ENST00000372407 TEX49A0A1B0GTD5 131 aa8.54□□□□□ -1.04
PTPRF-203ENST00000372407 LINC00269Q8N2A0 174 aa8.54□□□□□ -1.04
PTPRF-203ENST00000372407 WFDC9Q8NEX5 89 aa8.54□□□□□ -1.04
PTPRF-203ENST00000372407 CHD7Q9P2D1 2997 aa8.54□□□□□ -1.04
PTPRF-203ENST00000372407 TRBV6-5A0A0K0K1A5 114 aa8.53□□□□□ -1.04
PTPRF-203ENST00000372407 SMIM9A6NGZ8 99 aa8.53□□□□□ -1.04
PTPRF-203ENST00000372407 Q6YL49 198 aa8.53□□□□□ -1.04
PTPRF-203ENST00000372407 LRRC75A-AS1Q8N1F1 130 aa8.53□□□□□ -1.04
PTPRF-203ENST00000372407 LINC00308Q8TCZ7 52 aa8.53□□□□□ -1.04
PTPRF-203ENST00000372407 TNRC6BQ9UPQ9 1833 aaKnown RBP8.53□□□□□ -1.04
PTPRF-203ENST00000372407 REG3AQ06141 175 aa8.53□□□□□ -1.04
PTPRF-203ENST00000372407 FAM222AQ5U5X8 452 aa8.53□□□□□ -1.04
PTPRF-203ENST00000372407 MKI67P46013 3256 aaKnown RBP8.53□□□□□ -1.04
PTPRF-203ENST00000372407 IBA57-AS1B1ANH7 110 aa8.53□□□□□ -1.04
PTPRF-203ENST00000372407 MT-ATP8P03928 68 aa8.52□□□□□ -1.04
PTPRF-203ENST00000372407 LRRK2Q5S007 2527 aa8.52□□□□□ -1.05
PTPRF-203ENST00000372407 H7C423 109 aa8.52□□□□□ -1.05
PTPRF-203ENST00000372407 PRRC2AP48634 2157 aaKnown RBP8.52□□□□□ -1.05
PTPRF-203ENST00000372407 PYGO1Q9Y3Y4 419 aa8.52□□□□□ -1.05
PTPRF-203ENST00000372407 TRBV30A0A0K0K1B3 111 aa8.51□□□□□ -1.05
PTPRF-203ENST00000372407 NDUFV3P56181 108 aaKnown RBP8.51□□□□□ -1.05
PTPRF-203ENST00000372407 RNF183Q96D59 192 aa8.51□□□□□ -1.05
PTPRF-203ENST00000372407 LYRM9A8MSI8 78 aa8.51□□□□□ -1.05
PTPRF-203ENST00000372407 TRIAP1O43715 76 aa8.51□□□□□ -1.05
PTPRF-203ENST00000372407 BPY2O14599 106 aa8.5□□□□□ -1.05
PTPRF-203ENST00000372407 CFAP126Q5VTH2 177 aa8.5□□□□□ -1.05
PTPRF-203ENST00000372407 CHCHD10Q8WYQ3 142 aaPredicted RBP8.5□□□□□ -1.05
PTPRF-203ENST00000372407 BBC3Q96PG8 261 aaPredicted RBP8.5□□□□□ -1.05
PTPRF-203ENST00000372407 TRAV23DV6A0A075B6W5 121 aa8.5□□□□□ -1.05
PTPRF-203ENST00000372407 PRB2P02812 416 aaPredicted RBP8.5□□□□□ -1.05
PTPRF-203ENST00000372407 NRACQ8N912 160 aa8.5□□□□□ -1.05
PTPRF-203ENST00000372407 C11orf71Q6IPW1 123 aa8.5□□□□□ -1.05
PTPRF-203ENST00000372407 Q8N6K4 173 aa8.5□□□□□ -1.05
PTPRF-203ENST00000372407 TRBV6-4A0A1B0GX49 114 aa8.49□□□□□ -1.05
PTPRF-203ENST00000372407 RNASE3P12724 160 aaKnown RBP8.49□□□□□ -1.05
PTPRF-203ENST00000372407 PIK3CD-AS1Q5SR53 167 aa8.49□□□□□ -1.05
PTPRF-203ENST00000372407 IGHV4-31P0DP07 118 aa8.49□□□□□ -1.05
PTPRF-203ENST00000372407 C2orf91Q6ZV80 131 aa8.49□□□□□ -1.05
PTPRF-203ENST00000372407 TRBV6-8A0A0A6YYG3 113 aa8.49□□□□□ -1.05
PTPRF-203ENST00000372407 NDUFC2O95298 119 aa8.49□□□□□ -1.05
PTPRF-203ENST00000372407 UQCRQO14949 82 aa8.49□□□□□ -1.05
PTPRF-203ENST00000372407 C11orf21Q9P2W6 132 aa8.49□□□□□ -1.05
PTPRF-203ENST00000372407 CHKB-CPT1BH3BT56 60 aa8.48□□□□□ -1.05
PTPRF-203ENST00000372407 POLR2KP53803 58 aaKnown RBP8.48□□□□□ -1.05
PTPRF-203ENST00000372407 C20orf197Q8N268 126 aa8.48□□□□□ -1.05
PTPRF-203ENST00000372407 NUP210LQ5VU65 1888 aa8.48□□□□□ -1.05
PTPRF-203ENST00000372407 Q8N976 141 aa8.48□□□□□ -1.05
PTPRF-203ENST00000372407 WFDC11Q8NEX6 87 aa8.48□□□□□ -1.05
PTPRF-203ENST00000372407 UPK3BQ9BT76 320 aa8.48□□□□□ -1.05
PTPRF-203ENST00000372407 FAM110AQ9BQ89 295 aa8.48□□□□□ -1.05
PTPRF-203ENST00000372407 CHD9Q3L8U1 2897 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 Q6ZSV7 163 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 C11orf45Q8TAV5 145 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 KLLNB2CW77 178 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 TIMM17BO60830 172 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 PROK1P58294 105 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 C10orf99Q6UWK7 81 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 ATP5EP2Q5VTU8 51 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 HIGD2AQ9BW72 106 aa8.47□□□□□ -1.05
PTPRF-203ENST00000372407 CNFNQ9BYD5 112 aa8.46□□□□□ -1.05
PTPRF-203ENST00000372407 RBX1P62877 108 aa8.46□□□□□ -1.06
PTPRF-203ENST00000372407 SDIM1Q6ZPB5 146 aa8.46□□□□□ -1.06
PTPRF-203ENST00000372407 IGKV2-24A0A0C4DH68 120 aa8.46□□□□□ -1.06
PTPRF-203ENST00000372407 TSHBP01222 138 aa8.45□□□□□ -1.06
PTPRF-203ENST00000372407 PRR9Q5T870 116 aa8.45□□□□□ -1.06
PTPRF-203ENST00000372407 H0Y9J4 135 aa8.45□□□□□ -1.06
PTPRF-203ENST00000372407 C6orf99Q4VX62 202 aa8.45□□□□□ -1.06
PTPRF-203ENST00000372407 KLK5Q9Y337 293 aaPredicted RBP8.45□□□□□ -1.06
PTPRF-203ENST00000372407 LAMA3Q16787 3333 aa8.45□□□□□ -1.06
PTPRF-203ENST00000372407 SLPIP03973 132 aa8.45□□□□□ -1.06
PTPRF-203ENST00000372407 CRYGDP07320 174 aa8.45□□□□□ -1.06
PTPRF-203ENST00000372407 XAGE1AQ9HD64 81 aa8.45□□□□□ -1.06
PTPRF-203ENST00000372407 MTORP42345 2549 aa8.44□□□□□ -1.06
PTPRF-203ENST00000372407 C14orf177Q52M58 125 aa8.44□□□□□ -1.06
PTPRF-203ENST00000372407 C4orf48Q5BLP8 95 aa8.44□□□□□ -1.06
PTPRF-203ENST00000372407 PSMG3-AS1Q96PY0 264 aa8.44□□□□□ -1.06
PTPRF-203ENST00000372407 LINC00310P59036 64 aa8.44□□□□□ -1.06
PTPRF-203ENST00000372407 A8MZ25 164 aa8.43□□□□□ -1.06
PTPRF-203ENST00000372407 MRPS12O15235 138 aaKnown RBP8.43□□□□□ -1.06
PTPRF-203ENST00000372407 CDSNQ15517 529 aa8.43□□□□□ -1.06
PTPRF-203ENST00000372407 GAS8-AS1O95177 125 aa8.43□□□□□ -1.06
PTPRF-203ENST00000372407 MIFP14174 115 aa8.43□□□□□ -1.06
PTPRF-203ENST00000372407 B9D2Q9BPU9 175 aa8.43□□□□□ -1.06
PTPRF-203ENST00000372407 C9orf85Q96MD7 179 aa8.42□□□□□ -1.06
PTPRF-203ENST00000372407 DEFB131BA0A096LNP1 70 aa8.42□□□□□ -1.06
PTPRF-203ENST00000372407 LST1O00453 97 aa8.42□□□□□ -1.06
PTPRF-203ENST00000372407 MRPS36P82909 103 aaKnown RBP8.41□□□□□ -1.06
PTPRF-203ENST00000372407 ENHOQ6UWT2 76 aa8.41□□□□□ -1.06
PTPRF-203ENST00000372407 DCANP1Q8TF63 244 aa8.41□□□□□ -1.06
PTPRF-203ENST00000372407 IMUPQ9GZP8 106 aa8.41□□□□□ -1.06
PTPRF-203ENST00000372407 IGLV1-40P01703 118 aa8.41□□□□□ -1.06
PTPRF-203ENST00000372407 SPATA25Q9BR10 227 aa8.41□□□□□ -1.06
PTPRF-203ENST00000372407 CD164L2Q6UWJ8 174 aa8.4□□□□□ -1.06
PTPRF-203ENST00000372407 SYCNQ0VAF6 134 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms