RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PAM16Q9Y3D7 125 aa12.95□□□□□ -0.34
CLN3-204ENST00000357857 IGKCP01834 107 aa12.94□□□□□ -0.34
CLN3-204ENST00000357857 MRPS36P82909 103 aaKnown RBP12.94□□□□□ -0.34
CLN3-204ENST00000357857 GAGE6Q13070 117 aa12.94□□□□□ -0.34
CLN3-204ENST00000357857 AMMECR1LQ6DCA0 310 aa12.94□□□□□ -0.34
CLN3-204ENST00000357857 Q6ZUT4 128 aa12.94□□□□□ -0.34
CLN3-204ENST00000357857 CSDC2Q9Y534 153 aaKnown RBP12.94□□□□□ -0.34
CLN3-204ENST00000357857 MAJINQ3KP22 176 aa12.93□□□□□ -0.34
CLN3-204ENST00000357857 ZNF664Q8N3J9 261 aa12.93□□□□□ -0.34
CLN3-204ENST00000357857 AMELXQ99217 191 aa12.93□□□□□ -0.34
CLN3-204ENST00000357857 hDV102S1A0JD36 115 aa12.92□□□□□ -0.34
CLN3-204ENST00000357857 HSBP1L1C9JCN9 74 aa12.92□□□□□ -0.34
CLN3-204ENST00000357857 PLNP26678 52 aa12.92□□□□□ -0.34
CLN3-204ENST00000357857 SPATA45Q537H7 98 aa12.92□□□□□ -0.34
CLN3-204ENST00000357857 RNASE13Q5GAN3 156 aaKnown RBP12.92□□□□□ -0.34
CLN3-204ENST00000357857 OR5A1Q8NGJ0 315 aa12.92□□□□□ -0.34
CLN3-204ENST00000357857 TMEM101Q96IK0 257 aa12.92□□□□□ -0.34
CLN3-204ENST00000357857 ZNF25P17030 456 aaPredicted RBP12.91□□□□□ -0.34
CLN3-204ENST00000357857 IGLV4-69A0A075B6H9 119 aa12.9□□□□□ -0.34
CLN3-204ENST00000357857 C2orf88Q9BSF0 95 aa12.9□□□□□ -0.34
CLN3-204ENST00000357857 LELP1Q5T871 98 aa12.89□□□□□ -0.35
CLN3-204ENST00000357857 PRO1933Q9H354 126 aa12.89□□□□□ -0.35
CLN3-204ENST00000357857 CDC42SE2Q9NRR3 84 aa12.89□□□□□ -0.35
CLN3-204ENST00000357857 TIRAPP58753 221 aa12.88□□□□□ -0.35
CLN3-204ENST00000357857 PKIAP61925 76 aa12.88□□□□□ -0.35
CLN3-204ENST00000357857 LYPD5Q6UWN5 251 aa12.88□□□□□ -0.35
CLN3-204ENST00000357857 TMEM262E9PQX1 116 aa12.88□□□□□ -0.35
CLN3-204ENST00000357857 COL7A1Q02388 2944 aa12.87□□□□□ -0.35
CLN3-204ENST00000357857 STPG4Q8N801 248 aa12.87□□□□□ -0.35
CLN3-204ENST00000357857 C11orf86A6NJI1 115 aa12.86□□□□□ -0.35
CLN3-204ENST00000357857 TSTD3H0UI37 97 aa12.86□□□□□ -0.35
CLN3-204ENST00000357857 IGLC3P0DOY3 106 aa12.86□□□□□ -0.35
CLN3-204ENST00000357857 C15orf53Q8NAA6 179 aa12.86□□□□□ -0.35
CLN3-204ENST00000357857 IGLV4-60A0A075B6I1 120 aa12.85□□□□□ -0.35
CLN3-204ENST00000357857 A0A0J9YXV3 536 aa12.85□□□□□ -0.35
CLN3-204ENST00000357857 NFE4Q86UQ8 179 aa12.85□□□□□ -0.35
CLN3-204ENST00000357857 A0A1B0GUV1 79 aa12.85□□□□□ -0.35
CLN3-204ENST00000357857 ANKRD39Q53RE8 183 aa12.85□□□□□ -0.35
CLN3-204ENST00000357857 MPV17L2Q567V2 206 aa12.85□□□□□ -0.35
CLN3-204ENST00000357857 CHAC1Q9BUX1 264 aa12.85□□□□□ -0.35
CLN3-204ENST00000357857 PCP4L1A6NKN8 68 aa12.84□□□□□ -0.35
CLN3-204ENST00000357857 UBE2D1P51668 147 aa12.84□□□□□ -0.35
CLN3-204ENST00000357857 RBX1P62877 108 aa12.84□□□□□ -0.35
CLN3-204ENST00000357857 MEGF8Q7Z7M0 2845 aa12.83□□□□□ -0.36
CLN3-204ENST00000357857 TRAV8-6A0A0B4J262 113 aa12.82□□□□□ -0.36
CLN3-204ENST00000357857 TINCRA0A1B0GVN0 87 aa12.82□□□□□ -0.36
CLN3-204ENST00000357857 TCTAP57738 103 aa12.82□□□□□ -0.36
CLN3-204ENST00000357857 PRKDCP78527 4128 aaKnown RBP12.82□□□□□ -0.36
CLN3-204ENST00000357857 ESRGQ1W209 222 aa12.82□□□□□ -0.36
CLN3-204ENST00000357857 STAB2Q8WWQ8 2551 aa12.82□□□□□ -0.36
CLN3-204ENST00000357857 IGLL5B9A064 214 aa12.81□□□□□ -0.36
CLN3-204ENST00000357857 TMEM170BQ5T4T1 132 aa12.81□□□□□ -0.36
CLN3-204ENST00000357857 TRAV13-1A0A0B4J241 112 aa12.8□□□□□ -0.36
CLN3-204ENST00000357857 C14orf144Q96I85 54 aa12.8□□□□□ -0.36
CLN3-204ENST00000357857 ZNF22P17026 224 aaPredicted RBP12.79□□□□□ -0.36
CLN3-204ENST00000357857 FAM19A3Q7Z5A8 133 aa12.79□□□□□ -0.36
CLN3-204ENST00000357857 GEMIN7Q9H840 131 aaKnown RBP12.79□□□□□ -0.36
CLN3-204ENST00000357857 IGKV3OR2-268A0A0C4DH90 116 aa12.78□□□□□ -0.36
CLN3-204ENST00000357857 HERVK_113P61574 105 aa12.78□□□□□ -0.36
CLN3-204ENST00000357857 SEC11AP67812 179 aa12.78□□□□□ -0.36
CLN3-204ENST00000357857 Q8N3U1 123 aa12.78□□□□□ -0.36
CLN3-204ENST00000357857 NMUP48645 174 aa12.77□□□□□ -0.36
CLN3-204ENST00000357857 LINC00242Q5T6M2 205 aa12.77□□□□□ -0.36
CLN3-204ENST00000357857 MIEN1Q9BRT3 115 aa12.77□□□□□ -0.36
CLN3-204ENST00000357857 UQCR10Q9UDW1 63 aa12.77□□□□□ -0.36
CLN3-204ENST00000357857 IGKV2D-26A0A0A0MRZ7 120 aa12.76□□□□□ -0.37
CLN3-204ENST00000357857 HERVK_113P63121 156 aa12.76□□□□□ -0.37
CLN3-204ENST00000357857 WFDC10BQ8IUB3 73 aa12.76□□□□□ -0.37
CLN3-204ENST00000357857 E9PLD3 99 aa12.76□□□□□ -0.37
CLN3-204ENST00000357857 ANGP03950 147 aaKnown RBP12.76□□□□□ -0.37
CLN3-204ENST00000357857 COX8AP10176 69 aa12.76□□□□□ -0.37
CLN3-204ENST00000357857 LINC00469Q8N7U9 141 aa12.76□□□□□ -0.37
CLN3-204ENST00000357857 TMEM223A0PJW6 202 aa12.75□□□□□ -0.37
CLN3-204ENST00000357857 COX6A2Q02221 97 aa12.75□□□□□ -0.37
CLN3-204ENST00000357857 IGLV5-45A0A087WSX0 123 aa12.74□□□□□ -0.37
CLN3-204ENST00000357857 DDTP30046 118 aa12.74□□□□□ -0.37
CLN3-204ENST00000357857 SLC25A34Q6PIV7 304 aa12.74□□□□□ -0.37
CLN3-204ENST00000357857 LINC00269Q8N2A0 174 aa12.74□□□□□ -0.37
CLN3-204ENST00000357857 LINC00959A0A1B0GUT2 108 aa12.74□□□□□ -0.37
CLN3-204ENST00000357857 CLPSL2Q6UWE3 100 aa12.74□□□□□ -0.37
CLN3-204ENST00000357857 IGHV3-30P01768 117 aa12.73□□□□□ -0.37
CLN3-204ENST00000357857 IGHV3-33P01772 117 aa12.73□□□□□ -0.37
CLN3-204ENST00000357857 IGHV3-30-3P0DP02 117 aa12.73□□□□□ -0.37
CLN3-204ENST00000357857 IGHV3-30-5P0DP03 117 aa12.73□□□□□ -0.37
CLN3-204ENST00000357857 PCP2Q8IVA1 136 aa12.73□□□□□ -0.37
CLN3-204ENST00000357857 CDKN2A-AS1Q9UH64 79 aa12.73□□□□□ -0.37
CLN3-204ENST00000357857 H3BRM9 83 aa12.72□□□□□ -0.37
CLN3-204ENST00000357857 CCL18P55774 89 aa12.72□□□□□ -0.37
CLN3-204ENST00000357857 NUPR2A6NF83 97 aa12.71□□□□□ -0.37
CLN3-204ENST00000357857 REG3AQ06141 175 aa12.71□□□□□ -0.37
CLN3-204ENST00000357857 SS18Q15532 418 aa12.71□□□□□ -0.37
CLN3-204ENST00000357857 TP73-AS1Q9UF72 201 aa12.71□□□□□ -0.37
CLN3-204ENST00000357857 MRPS16Q9Y3D3 137 aaKnown RBP12.71□□□□□ -0.37
CLN3-204ENST00000357857 LINC00588Q9Y4M8 146 aa12.71□□□□□ -0.37
CLN3-204ENST00000357857 BOD1L2Q8IYS8 172 aa12.71□□□□□ -0.38
CLN3-204ENST00000357857 KLK12Q9UKR0 248 aa12.71□□□□□ -0.38
CLN3-204ENST00000357857 CCL25O15444 150 aa12.7□□□□□ -0.38
CLN3-204ENST00000357857 TTTY13Q9BZ97 58 aa12.7□□□□□ -0.38
CLN3-204ENST00000357857 IGHV3-64A0A075B6Q5 118 aa12.69□□□□□ -0.38
CLN3-204ENST00000357857 LEPROTO15243 131 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms