RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 PROK1P58294 105 aa13.38□□□□□ -0.27
SMC4-201ENST00000344722 C1orf195Q5TG92 126 aa13.38□□□□□ -0.27
SMC4-201ENST00000344722 Q8N6K4 173 aa13.37□□□□□ -0.27
SMC4-201ENST00000344722 PCDH15Q96QU1 1955 aa13.37□□□□□ -0.27
SMC4-201ENST00000344722 DEFB121Q5J5C9 76 aa13.37□□□□□ -0.27
SMC4-201ENST00000344722 C22orf34Q6ZV56 151 aa13.37□□□□□ -0.27
SMC4-201ENST00000344722 FAM19A5Q7Z5A7 132 aaPredicted RBP13.37□□□□□ -0.27
SMC4-201ENST00000344722 PCNX2A6NKB5 2137 aa13.36□□□□□ -0.27
SMC4-201ENST00000344722 C6orf99Q4VX62 202 aa13.36□□□□□ -0.27
SMC4-201ENST00000344722 KLK12Q9UKR0 248 aa13.36□□□□□ -0.27
SMC4-201ENST00000344722 TSPEAR-AS2P59090 65 aa13.36□□□□□ -0.27
SMC4-201ENST00000344722 IGLV2-18A0A075B6J9 118 aa13.35□□□□□ -0.27
SMC4-201ENST00000344722 LMO4P61968 165 aa13.35□□□□□ -0.27
SMC4-201ENST00000344722 ESM1Q9NQ30 184 aa13.35□□□□□ -0.27
SMC4-201ENST00000344722 ABCA4P78363 2273 aa13.34□□□□□ -0.27
SMC4-201ENST00000344722 CCKP06307 115 aa13.34□□□□□ -0.27
SMC4-201ENST00000344722 C9orf66Q5T8R8 295 aa13.34□□□□□ -0.27
SMC4-201ENST00000344722 REG3AQ06141 175 aa13.34□□□□□ -0.27
SMC4-201ENST00000344722 LINC00269Q8N2A0 174 aa13.34□□□□□ -0.27
SMC4-201ENST00000344722 TNFRSF13BO14836 293 aaPredicted RBP13.34□□□□□ -0.27
SMC4-201ENST00000344722 CLPSL1A2RUU4 121 aa13.33□□□□□ -0.27
SMC4-201ENST00000344722 FAM19A3Q7Z5A8 133 aa13.33□□□□□ -0.27
SMC4-201ENST00000344722 CHCHD10Q8WYQ3 142 aaPredicted RBP13.33□□□□□ -0.27
SMC4-201ENST00000344722 TRAV7A0A075B6U4 112 aa13.33□□□□□ -0.28
SMC4-201ENST00000344722 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.32□□□□□ -0.287e-7■■■■■ 39.8
SMC4-201ENST00000344722 CSDC2Q9Y534 153 aaKnown RBP13.32□□□□□ -0.28
SMC4-201ENST00000344722 TRBV6-8A0A0A6YYG3 113 aa13.32□□□□□ -0.28
SMC4-201ENST00000344722 TRBV6-4A0A1B0GX49 114 aa13.31□□□□□ -0.28
SMC4-201ENST00000344722 MED13LQ71F56 2210 aa13.31□□□□□ -0.28
SMC4-201ENST00000344722 TRBV7-7A0A0K0K1E9 115 aa13.3□□□□□ -0.28
SMC4-201ENST00000344722 EML5Q05BV3 1969 aa13.3□□□□□ -0.28
SMC4-201ENST00000344722 PLCE1Q9P212 2302 aa13.3□□□□□ -0.28
SMC4-201ENST00000344722 RPL28P46779 137 aaKnown RBP13.29□□□□□ -0.28
SMC4-201ENST00000344722 NRGNQ92686 78 aa13.29□□□□□ -0.28
SMC4-201ENST00000344722 LINC01546A6NGU7 62 aa13.28□□□□□ -0.28
SMC4-201ENST00000344722 MIFP14174 115 aa13.28□□□□□ -0.28
SMC4-201ENST00000344722 PLXNB1O43157 2135 aa13.27□□□□□ -0.28
SMC4-201ENST00000344722 C10orf142B7Z368 130 aa13.26□□□□□ -0.29
SMC4-201ENST00000344722 DEFB114Q30KQ6 69 aa13.26□□□□□ -0.29
SMC4-201ENST00000344722 Q8NA96 180 aa13.26□□□□□ -0.29
SMC4-201ENST00000344722 Q6ZQY7 126 aa13.26□□□□□ -0.29
SMC4-201ENST00000344722 A0A087WVE0 104 aa13.26□□□□□ -0.29
SMC4-201ENST00000344722 H0Y9J4 135 aa13.25□□□□□ -0.29
SMC4-201ENST00000344722 CCL18P55774 89 aa13.25□□□□□ -0.29
SMC4-201ENST00000344722 ADAMTSL4-AS1Q5T5F5 129 aa13.25□□□□□ -0.29
SMC4-201ENST00000344722 Q6ZSV7 163 aa13.25□□□□□ -0.29
SMC4-201ENST00000344722 CPAMD8Q8IZJ3 1885 aa13.24□□□□□ -0.29
SMC4-201ENST00000344722 KLK5Q9Y337 293 aaPredicted RBP13.24□□□□□ -0.29
SMC4-201ENST00000344722 PRO0461Q9UI25 63 aa13.24□□□□□ -0.29
SMC4-201ENST00000344722 PPDPFQ9H3Y8 114 aa13.23□□□□□ -0.29
SMC4-201ENST00000344722 LOC107984640A0A0U1RRK4 108 aa13.23□□□□□ -0.29
SMC4-201ENST00000344722 COX17Q14061 63 aa13.23□□□□□ -0.29
SMC4-201ENST00000344722 DEFB113Q30KQ7 82 aa13.23□□□□□ -0.29
SMC4-201ENST00000344722 NBASA2RRP1 2371 aa13.23□□□□□ -0.29
SMC4-201ENST00000344722 LINC00242Q5T6M2 205 aa13.23□□□□□ -0.29
SMC4-201ENST00000344722 DCANP1Q8TF63 244 aa13.23□□□□□ -0.29
SMC4-201ENST00000344722 DEFB135Q30KP9 77 aa13.22□□□□□ -0.29
SMC4-201ENST00000344722 AMELXQ99217 191 aa13.22□□□□□ -0.29
SMC4-201ENST00000344722 TANC2Q9HCD6 1990 aa13.22□□□□□ -0.29
SMC4-201ENST00000344722 UBE2AP49459 152 aa13.22□□□□□ -0.29
SMC4-201ENST00000344722 CDC42SE2Q9NRR3 84 aa13.22□□□□□ -0.29
SMC4-201ENST00000344722 SMCPP49901 116 aaPredicted RBP13.21□□□□□ -0.29
SMC4-201ENST00000344722 SHISA2Q6UWI4 295 aa13.21□□□□□ -0.29
SMC4-201ENST00000344722 RIF1Q5UIP0 2472 aaKnown RBP13.21□□□□□ -0.29
SMC4-201ENST00000344722 LYRM9A8MSI8 78 aa13.21□□□□□ -0.3
SMC4-201ENST00000344722 SMIM1B2RUZ4 78 aa13.21□□□□□ -0.3
SMC4-201ENST00000344722 DEFB4AO15263 64 aa13.2□□□□□ -0.3
SMC4-201ENST00000344722 NTM-AS1Q6ZSK4 140 aa13.2□□□□□ -0.3
SMC4-201ENST00000344722 CD164L2Q6UWJ8 174 aa13.2□□□□□ -0.3
SMC4-201ENST00000344722 LINC00959A0A1B0GUT2 108 aa13.2□□□□□ -0.3
SMC4-201ENST00000344722 MUC7Q8TAX7 377 aa13.19□□□□□ -0.3
SMC4-201ENST00000344722 C3orf84H3BNL1 204 aa13.19□□□□□ -0.3
SMC4-201ENST00000344722 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.19□□□□□ -0.3
SMC4-201ENST00000344722 A0A087WYN8 130 aa13.18□□□□□ -0.3
SMC4-201ENST00000344722 PRORYQ9H606 182 aa13.18□□□□□ -0.3
SMC4-201ENST00000344722 CHCHD7Q9BUK0 85 aa13.18□□□□□ -0.3
SMC4-201ENST00000344722 C11orf71Q6IPW1 123 aa13.18□□□□□ -0.3
SMC4-201ENST00000344722 Q8IZM0 81 aa13.18□□□□□ -0.3
SMC4-201ENST00000344722 Q8N814 137 aa13.18□□□□□ -0.3
SMC4-201ENST00000344722 XAGE1AQ9HD64 81 aa13.17□□□□□ -0.3
SMC4-201ENST00000344722 MRGPRG-AS1Q2M3A8 158 aa13.17□□□□□ -0.3
SMC4-201ENST00000344722 C1orf158Q8N1D5 194 aa13.17□□□□□ -0.3
SMC4-201ENST00000344722 F8W735 103 aaPredicted RBP13.17□□□□□ -0.3
SMC4-201ENST00000344722 IGLV1-40P01703 118 aa13.16□□□□□ -0.3
SMC4-201ENST00000344722 Q6YL49 198 aa13.16□□□□□ -0.3
SMC4-201ENST00000344722 ZNF580Q9UK33 172 aa13.16□□□□□ -0.3
SMC4-201ENST00000344722 IGKV4-1P06312 121 aa13.15□□□□□ -0.3
SMC4-201ENST00000344722 M0R378 163 aa13.14□□□□□ -0.31
SMC4-201ENST00000344722 CRYGAP11844 174 aa13.13□□□□□ -0.31
SMC4-201ENST00000344722 COX6A2Q02221 97 aa13.13□□□□□ -0.31
SMC4-201ENST00000344722 WFDC10BQ8IUB3 73 aa13.13□□□□□ -0.31
SMC4-201ENST00000344722 A6NED7 52 aa13.13□□□□□ -0.31
SMC4-201ENST00000344722 COL5A1P20908 1838 aaPredicted RBP13.12□□□□□ -0.31
SMC4-201ENST00000344722 ZNF73O43830 326 aaPredicted RBP13.12□□□□□ -0.31
SMC4-201ENST00000344722 B9D2Q9BPU9 175 aa13.12□□□□□ -0.31
SMC4-201ENST00000344722 SBSPONQ8IVN8 264 aa13.12□□□□□ -0.31
SMC4-201ENST00000344722 DHRS4-AS1Q9P1J3 65 aa13.11□□□□□ -0.31
SMC4-201ENST00000344722 PTPRSQ13332 1948 aa13.11□□□□□ -0.31
SMC4-201ENST00000344722 RPS28P62857 69 aaKnown RBP13.11□□□□□ -0.31
SMC4-201ENST00000344722 C10orf99Q6UWK7 81 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms