RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ATP11AUNQ6ZP68 121 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 WFDC10BQ8IUB3 73 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 SOCS3O14543 225 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 OCC1Q8TAD7 63 aa6.04□□□□□ -1.44
HMGB1-203ENST00000341423 IGKV2-28A0A075B6P5 120 aa6.04□□□□□ -1.44
HMGB1-203ENST00000341423 H3BNG1 76 aa6.04□□□□□ -1.44
HMGB1-203ENST00000341423 K7EMI3 77 aa6.04□□□□□ -1.44
HMGB1-203ENST00000341423 IGKV2D-28P01615 120 aa6.04□□□□□ -1.44
HMGB1-203ENST00000341423 DCANP1Q8TF63 244 aa6.04□□□□□ -1.44
HMGB1-203ENST00000341423 A8MZ25 164 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 DDTP30046 118 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 BRWD1-AS2P59051 145 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 ZNF575Q86XF7 245 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 EP400Q96L91 3159 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 H0YIZ8 118 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 SPACA4Q8TDM5 124 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 C10orf142B7Z368 130 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 MUSTN1Q8IVN3 82 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 SND1-IT1Q9HBX3 110 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 F8WDY8 70 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 FAM104BQ5XKR9 115 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 ANKRD29Q8N6D5 301 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 RNF185Q96GF1 192 aa6.03□□□□□ -1.44
HMGB1-203ENST00000341423 TRANK1O15050 2925 aa6.02□□□□□ -1.45
HMGB1-203ENST00000341423 P0C879 139 aa6.02□□□□□ -1.45
HMGB1-203ENST00000341423 KRTAP10-11P60412 298 aa6.02□□□□□ -1.45
HMGB1-203ENST00000341423 F8VRH5 84 aa6.02□□□□□ -1.45
HMGB1-203ENST00000341423 LST1O00453 97 aa6.02□□□□□ -1.45
HMGB1-203ENST00000341423 CFAP126Q5VTH2 177 aa6.02□□□□□ -1.45
HMGB1-203ENST00000341423 OR10D4PQ8NGN7 298 aa6.02□□□□□ -1.45
HMGB1-203ENST00000341423 HAMPP81172 84 aa6.01□□□□□ -1.45
HMGB1-203ENST00000341423 AGRNO00468 2067 aa6.01□□□□□ -1.45
HMGB1-203ENST00000341423 CT83Q5H943 113 aa6.01□□□□□ -1.45
HMGB1-203ENST00000341423 IGSF10Q6WRI0 2623 aa6.01□□□□□ -1.45
HMGB1-203ENST00000341423 TRAV8-2A0A0B4J237 113 aa6.01□□□□□ -1.45
HMGB1-203ENST00000341423 GATA1P15976 413 aaPredicted RBP6.01□□□□□ -1.45
HMGB1-203ENST00000341423 FXYD5Q96DB9 178 aa6.01□□□□□ -1.45
HMGB1-203ENST00000341423 UBL5Q9BZL1 73 aa6.01□□□□□ -1.45
HMGB1-203ENST00000341423 DHRS4-AS1Q9P1J3 65 aa6.01□□□□□ -1.45
HMGB1-203ENST00000341423 FLNAP21333 2647 aaKnown RBP6□□□□□ -1.45
HMGB1-203ENST00000341423 RPL37AP8A6NKH3 93 aa6□□□□□ -1.45
HMGB1-203ENST00000341423 ESRGQ1W209 222 aa6□□□□□ -1.45
HMGB1-203ENST00000341423 C9orf116Q5BN46 136 aaPredicted RBP6□□□□□ -1.45
HMGB1-203ENST00000341423 SLPIP03973 132 aa6□□□□□ -1.45
HMGB1-203ENST00000341423 C10orf25Q5T742 122 aa6□□□□□ -1.45
HMGB1-203ENST00000341423 CHCHD1Q96BP2 118 aaKnown RBP6□□□□□ -1.45
HMGB1-203ENST00000341423 CELA1Q9UNI1 258 aa5.99□□□□□ -1.45
HMGB1-203ENST00000341423 M0R378 163 aa5.99□□□□□ -1.45
HMGB1-203ENST00000341423 CTAG1AP78358 180 aa5.99□□□□□ -1.45
HMGB1-203ENST00000341423 COL5A1-AS1Q5SY13 56 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 GDF5OSQ5U4N7 250 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 DSCAML1Q8TD84 2053 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 SPAG11AQ6PDA7 123 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 TP53TG3Q9ULZ0 132 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 LOC100131303A0A0U1RQF7 123 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 A4D1N5 150 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 NREPQ16612 68 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 KIF25-AS1Q9Y6Z4 181 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 CXCL1P09341 107 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 LINC00526Q96FQ7 95 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 UPK3BQ9BT76 320 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 HIST1H4AP62805 103 aaKnown RBP5.98□□□□□ -1.45
HMGB1-203ENST00000341423 NRACQ8N912 160 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 LINC00588Q9Y4M8 146 aa5.98□□□□□ -1.45
HMGB1-203ENST00000341423 SMIM6P0DI80 62 aa5.97□□□□□ -1.45
HMGB1-203ENST00000341423 NUP35Q8NFH5 326 aa5.97□□□□□ -1.45
HMGB1-203ENST00000341423 ZFAND3Q9H8U3 227 aa5.97□□□□□ -1.45
HMGB1-203ENST00000341423 SERTAD4-AS1Q5TG53 156 aa5.97□□□□□ -1.45
HMGB1-203ENST00000341423 C1orf147Q96MC9 270 aaPredicted RBP5.97□□□□□ -1.45
HMGB1-203ENST00000341423 CEND1Q8N111 149 aa5.97□□□□□ -1.45
HMGB1-203ENST00000341423 TRBV30A0A0K0K1B3 111 aa5.97□□□□□ -1.45
HMGB1-203ENST00000341423 TRBV10-2A0A0K0K1G8 114 aa5.96□□□□□ -1.45
HMGB1-203ENST00000341423 MP68P56378 58 aa5.96□□□□□ -1.46
HMGB1-203ENST00000341423 C19orf73Q9NVV2 129 aa5.96□□□□□ -1.46
HMGB1-203ENST00000341423 ATG2AQ2TAZ0 1938 aa5.96□□□□□ -1.46
HMGB1-203ENST00000341423 IBA57-AS1B1ANH7 110 aa5.96□□□□□ -1.46
HMGB1-203ENST00000341423 MRPL51Q4U2R6 128 aaKnown RBP5.96□□□□□ -1.46
HMGB1-203ENST00000341423 KMT2EQ8IZD2 1858 aa5.96□□□□□ -1.46
HMGB1-203ENST00000341423 FAM236AA0A1B0GUQ0 79 aa5.96□□□□□ -1.46
HMGB1-203ENST00000341423 FAM236BA0A1B0GV22 79 aa5.96□□□□□ -1.46
HMGB1-203ENST00000341423 PRO1933Q9H354 126 aa5.96□□□□□ -1.46
HMGB1-203ENST00000341423 NEXN-AS1Q8NBZ9 246 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 LINC00846Q9NV44 126 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 ORMDL1Q9P0S3 153 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 X6R8D5 127 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 PCNX3Q9H6A9 2034 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 A0A087WTM6 91 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 PLXNB1O43157 2135 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 Q6ZVQ6 151 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 STAB2Q8WWQ8 2551 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 SMIM27A0A1W2PRY6 76 aa5.95□□□□□ -1.46
HMGB1-203ENST00000341423 RPL39LQ96EH5 51 aaKnown RBP5.95□□□□□ -1.46
HMGB1-203ENST00000341423 EXPH5Q8NEV8 1989 aa5.94□□□□□ -1.46
HMGB1-203ENST00000341423 A0A0J9YXV3 536 aa5.94□□□□□ -1.46
HMGB1-203ENST00000341423 J3QQQ9 107 aa5.94□□□□□ -1.46
HMGB1-203ENST00000341423 NUPR1O60356 82 aa5.94□□□□□ -1.46
HMGB1-203ENST00000341423 H0YGX0 51 aa5.94□□□□□ -1.46
HMGB1-203ENST00000341423 ANKRD39Q53RE8 183 aa5.94□□□□□ -1.46
HMGB1-203ENST00000341423 PLA2G10O15496 165 aa5.94□□□□□ -1.46
HMGB1-203ENST00000341423 EIF4EBP1Q13541 118 aaPredicted RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms