RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ZFP36P26651 326 aaKnown RBP4.11□□□□□ -1.75
CSDE1-202ENST00000339438 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 TP53TG1Q9Y2A0 90 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 S4R3C0 116 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 DEFB113Q30KQ7 82 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 BRD3OSQ6XYD6 125 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 C10orf105Q8TEF2 133 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 JPT2Q9H910 190 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 IGHV4-30-2A0A087WSY4 118 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 IGF1P05019 195 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 NSUN5P1Q3KNT7 163 aa4.11□□□□□ -1.75
CSDE1-202ENST00000339438 NOTCH3Q9UM47 2321 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 CLPSL1A2RUU4 121 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 NXPH4O95158 308 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 CTSGP08311 255 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 RHOHQ15669 191 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 LINC00336Q6ZUF6 198 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 TMEM61Q8N0U2 210 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 LINC00477Q96M19 166 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 WNK1Q9H4A3 2382 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 IGHV1-3A0A0C4DH29 117 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 IGHV4-61A0A0C4DH41 118 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 BUB3O43684 328 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 IGHV1-8P0DP01 117 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 LINC01561Q8N1V8 128 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 TMEM141Q96I45 108 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 NBR2O15453 112 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 MALP21145 153 aa4.1□□□□□ -1.75
CSDE1-202ENST00000339438 OPRPNQ99935 248 aaPredicted RBP4.1□□□□□ -1.75
CSDE1-202ENST00000339438 FHL2Q14192 279 aa4.09□□□□□ -1.75
CSDE1-202ENST00000339438 RNF152Q8N8N0 203 aa4.09□□□□□ -1.75
CSDE1-202ENST00000339438 J3QLI3 93 aa4.09□□□□□ -1.75
CSDE1-202ENST00000339438 TRACP01848 142 aa4.09□□□□□ -1.75
CSDE1-202ENST00000339438 IGHV4-31P0DP07 118 aa4.09□□□□□ -1.75
CSDE1-202ENST00000339438 RNASE3P12724 160 aaKnown RBP4.09□□□□□ -1.75
CSDE1-202ENST00000339438 C19orf54Q5BKX5 351 aa4.09□□□□□ -1.75
CSDE1-202ENST00000339438 ATOX1O00244 68 aa4.09□□□□□ -1.76
CSDE1-202ENST00000339438 LGALS3P17931 250 aaKnown RBP4.09□□□□□ -1.76
CSDE1-202ENST00000339438 RPL18AQ02543 176 aaKnown RBP4.09□□□□□ -1.76
CSDE1-202ENST00000339438 SPANXN1Q5VSR9 72 aa4.09□□□□□ -1.76
CSDE1-202ENST00000339438 VMO1Q7Z5L0 202 aa4.09□□□□□ -1.76
CSDE1-202ENST00000339438 Q8N2B8 174 aa4.09□□□□□ -1.76
CSDE1-202ENST00000339438 PRO0628Q9UI54 55 aa4.09□□□□□ -1.76
CSDE1-202ENST00000339438 TRBV27A0A0K0K1C4 114 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV1-69P01742 117 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 TIRAPP58753 221 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 LY6EQ16553 131 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 C9orf129Q5T035 196 aaKnown RBP4.08□□□□□ -1.76
CSDE1-202ENST00000339438 WFDC11Q8NEX6 87 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 HIVEP2P31629 2446 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 ZFAND2AQ8N6M9 145 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 DAND5Q8N907 189 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 DEFB104AQ8WTQ1 72 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV3-30-3P0DP02 117 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 DAZ2Q13117 558 aaKnown RBP4.08□□□□□ -1.76
CSDE1-202ENST00000339438 MIAQ16674 131 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 DAZ4Q86SG3 579 aaKnown RBP4.08□□□□□ -1.76
CSDE1-202ENST00000339438 APRG1Q8IVJ8 170 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 SERP2Q8N6R1 65 aa4.08□□□□□ -1.76
CSDE1-202ENST00000339438 DAZ1Q9NQZ3 744 aaKnown RBP4.08□□□□□ -1.76
CSDE1-202ENST00000339438 DAZ3Q9NR90 486 aaKnown RBP4.08□□□□□ -1.76
CSDE1-202ENST00000339438 BUB1B-PAK6H3BSN5 160 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 KRTAP10-3P60369 221 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 Q1RN00 199 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 TMEM86BQ8N661 226 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 OBSCN-AS1Q96MR7 158 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 FAM218AQ96MZ4 157 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 TRAV8-3A0A0A6YYJ7 113 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 EDN2P20800 178 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 NDPQ00604 133 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV3-64A0A075B6Q5 118 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 ADARB2-AS1A8MUL3 147 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 MED14OSP0DP75 135 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 KAAG1Q9UBP8 84 aa4.07□□□□□ -1.76
CSDE1-202ENST00000339438 FN1P02751 2386 aaKnown RBP4.07□□□□□ -1.76
CSDE1-202ENST00000339438 MRPL53Q96EL3 112 aaKnown RBP4.06□□□□□ -1.76
CSDE1-202ENST00000339438 C20orf173Q96LM9 149 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 TRBV6-5A0A0K0K1A5 114 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 PSMB8P28062 276 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 NPBQ8NG41 125 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 Q96MF0 132 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 APOBP04114 4563 aaKnown RBP4.06□□□□□ -1.76
CSDE1-202ENST00000339438 TRAV13-1A0A0B4J241 112 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV3-35A0A0C4DH35 117 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 A0A0J9YXV3 536 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV3-23P01764 117 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 PRSS2P07478 247 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 SAA4P35542 130 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 SUMO4Q6EEV6 95 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 FP248Q71RG6 208 aaPredicted RBP4.06□□□□□ -1.76
CSDE1-202ENST00000339438 RNF5Q99942 180 aa4.06□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV3OR16-8A0A075B7F1 116 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 A0A087WVE0 104 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 A8MZ25 164 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV4-38-2P0DP08 117 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 RNASE4P34096 147 aaKnown RBP4.05□□□□□ -1.76
CSDE1-202ENST00000339438 MRPS36P82909 103 aaKnown RBP4.05□□□□□ -1.76
CSDE1-202ENST00000339438 FAM222AQ5U5X8 452 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 U3KQE9 123 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 IGLV4-3A0A075B6K6 122 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms