RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PET117Q6UWS5 81 aa10.59□□□□□ -0.71
CLN3-201ENST00000333496 MAP1LC3CQ9BXW4 147 aa10.59□□□□□ -0.71
CLN3-201ENST00000333496 Q9HAA7 133 aa10.59□□□□□ -0.71
CLN3-201ENST00000333496 AP5S1Q9NUS5 200 aa10.59□□□□□ -0.71
CLN3-201ENST00000333496 A0A087WTM6 91 aa10.58□□□□□ -0.72
CLN3-201ENST00000333496 TRBV6-8A0A0A6YYG3 113 aa10.58□□□□□ -0.72
CLN3-201ENST00000333496 LAGE3Q14657 143 aa10.58□□□□□ -0.72
CLN3-201ENST00000333496 COL5A1-AS1Q5SY13 56 aa10.58□□□□□ -0.72
CLN3-201ENST00000333496 ST20Q9HBF5 79 aa10.58□□□□□ -0.72
CLN3-201ENST00000333496 FAM104BQ5XKR9 115 aa10.58□□□□□ -0.72
CLN3-201ENST00000333496 NTM-AS1Q6ZSK4 140 aa10.58□□□□□ -0.72
CLN3-201ENST00000333496 FA2HQ7L5A8 372 aa10.58□□□□□ -0.72
CLN3-201ENST00000333496 FUSP35637 526 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLN3-201ENST00000333496 AMN1Q8IY45 258 aa10.57□□□□□ -0.72
CLN3-201ENST00000333496 ATOH7Q8N100 152 aa10.57□□□□□ -0.72
CLN3-201ENST00000333496 DNAJC30Q96LL9 226 aa10.57□□□□□ -0.72
CLN3-201ENST00000333496 HSPG2P98160 4391 aa10.56□□□□□ -0.72
CLN3-201ENST00000333496 LRCOL1A6NCL2 159 aa10.56□□□□□ -0.72
CLN3-201ENST00000333496 H7C1H1 209 aa10.56□□□□□ -0.72
CLN3-201ENST00000333496 SMIM15Q7Z3B0 74 aa10.56□□□□□ -0.72
CLN3-201ENST00000333496 ORMDL3Q8N138 153 aa10.56□□□□□ -0.72
CLN3-201ENST00000333496 LAMTOR2Q9Y2Q5 125 aa10.56□□□□□ -0.72
CLN3-201ENST00000333496 HSBP1L1C9JCN9 74 aa10.55□□□□□ -0.72
CLN3-201ENST00000333496 PRSS3P2Q8NHM4 247 aa10.55□□□□□ -0.72
CLN3-201ENST00000333496 PSCAO43653 123 aa10.55□□□□□ -0.72
CLN3-201ENST00000333496 BATFQ16520 125 aa10.55□□□□□ -0.72
CLN3-201ENST00000333496 MRPL51Q4U2R6 128 aaKnown RBP10.55□□□□□ -0.72
CLN3-201ENST00000333496 RNF185Q96GF1 192 aa10.55□□□□□ -0.72
CLN3-201ENST00000333496 PRELID3AQ96N28 172 aa10.55□□□□□ -0.72
CLN3-201ENST00000333496 CHCHD7Q9BUK0 85 aa10.55□□□□□ -0.72
CLN3-201ENST00000333496 APOBP04114 4563 aaKnown RBP10.54□□□□□ -0.72
CLN3-201ENST00000333496 D6R8Y8 96 aa10.54□□□□□ -0.72
CLN3-201ENST00000333496 KLK12Q9UKR0 248 aa10.54□□□□□ -0.72
CLN3-201ENST00000333496 A0A087WX48 190 aa10.53□□□□□ -0.72
CLN3-201ENST00000333496 TRAV8-3A0A0A6YYJ7 113 aa10.53□□□□□ -0.72
CLN3-201ENST00000333496 TRAV26-2A0A0B4J265 109 aa10.53□□□□□ -0.72
CLN3-201ENST00000333496 PPBPP02775 128 aa10.53□□□□□ -0.72
CLN3-201ENST00000333496 MAJINQ3KP22 176 aa10.53□□□□□ -0.72
CLN3-201ENST00000333496 MPV17L2Q567V2 206 aa10.53□□□□□ -0.72
CLN3-201ENST00000333496 LINC01545Q5VT33 79 aa10.53□□□□□ -0.72
CLN3-201ENST00000333496 PGPEP1Q9NXJ5 209 aa10.53□□□□□ -0.72
CLN3-201ENST00000333496 TMEM262E9PQX1 116 aa10.52□□□□□ -0.73
CLN3-201ENST00000333496 ZNF25P17030 456 aaPredicted RBP10.52□□□□□ -0.73
CLN3-201ENST00000333496 TMEM97Q5BJF2 176 aa10.52□□□□□ -0.73
CLN3-201ENST00000333496 LINC00173Q6ZV60 143 aa10.52□□□□□ -0.73
CLN3-201ENST00000333496 RYR1P21817 5038 aa10.52□□□□□ -0.73
CLN3-201ENST00000333496 CKS2P33552 79 aa10.51□□□□□ -0.73
CLN3-201ENST00000333496 MAPKAPK5-AS1Q8N8E1 139 aa10.51□□□□□ -0.73
CLN3-201ENST00000333496 CHCHD5Q9BSY4 110 aa10.51□□□□□ -0.73
CLN3-201ENST00000333496 DLEU1O43261 78 aa10.51□□□□□ -0.73
CLN3-201ENST00000333496 DEFB104AQ8WTQ1 72 aa10.51□□□□□ -0.73
CLN3-201ENST00000333496 TM2D2Q9BX73 214 aa10.51□□□□□ -0.73
CLN3-201ENST00000333496 TRBV25-1A0A075B6N4 114 aa10.5□□□□□ -0.73
CLN3-201ENST00000333496 SMKR1H3BMG3 65 aa10.5□□□□□ -0.73
CLN3-201ENST00000333496 HBDP02042 147 aa10.5□□□□□ -0.73
CLN3-201ENST00000333496 G0S2P27469 103 aa10.5□□□□□ -0.73
CLN3-201ENST00000333496 IFI27P40305 119 aaPredicted RBP10.5□□□□□ -0.73
CLN3-201ENST00000333496 WFDC2Q14508 124 aa10.5□□□□□ -0.73
CLN3-201ENST00000333496 UBE2WQ96B02 151 aa10.5□□□□□ -0.73
CLN3-201ENST00000333496 RPL39LQ96EH5 51 aaKnown RBP10.5□□□□□ -0.73
CLN3-201ENST00000333496 NCR2O95944 276 aa10.49□□□□□ -0.73
CLN3-201ENST00000333496 SLC25A34Q6PIV7 304 aa10.49□□□□□ -0.73
CLN3-201ENST00000333496 ENHOQ6UWT2 76 aa10.49□□□□□ -0.73
CLN3-201ENST00000333496 CDK2AP2O75956 126 aa10.48□□□□□ -0.73
CLN3-201ENST00000333496 GAS8-AS1O95177 125 aa10.48□□□□□ -0.73
CLN3-201ENST00000333496 GAGE6Q13070 117 aa10.48□□□□□ -0.73
CLN3-201ENST00000333496 MRAP2Q96G30 205 aa10.48□□□□□ -0.73
CLN3-201ENST00000333496 PMCHL2Q9BQD1 86 aa10.48□□□□□ -0.73
CLN3-201ENST00000333496 KRTAP17-1Q9BYP8 105 aa10.48□□□□□ -0.73
CLN3-201ENST00000333496 MAP1LC3AQ9H492 121 aa10.48□□□□□ -0.73
CLN3-201ENST00000333496 A0A096LNJ9 63 aa10.47□□□□□ -0.73
CLN3-201ENST00000333496 LINC01546A6NGU7 62 aa10.47□□□□□ -0.73
CLN3-201ENST00000333496 NPYP01303 97 aa10.47□□□□□ -0.73
CLN3-201ENST00000333496 STPG4Q8N801 248 aa10.47□□□□□ -0.73
CLN3-201ENST00000333496 Q8N814 137 aa10.47□□□□□ -0.73
CLN3-201ENST00000333496 IGKV2D-24A0A075B6R9 120 aa10.47□□□□□ -0.73
CLN3-201ENST00000333496 hDV102S1A0JD36 115 aa10.47□□□□□ -0.73
CLN3-201ENST00000333496 ANGP03950 147 aaKnown RBP10.47□□□□□ -0.73
CLN3-201ENST00000333496 RBX1P62877 108 aa10.47□□□□□ -0.73
CLN3-201ENST00000333496 LOC389332A0A1B0GUA5 103 aa10.46□□□□□ -0.74
CLN3-201ENST00000333496 NXT2Q9NPJ8 142 aaKnown RBP10.46□□□□□ -0.74
CLN3-201ENST00000333496 COX11Q9Y6N1 276 aa10.46□□□□□ -0.74
CLN3-201ENST00000333496 H0Y8G0 127 aa10.45□□□□□ -0.74
CLN3-201ENST00000333496 LECT2O14960 151 aa10.45□□□□□ -0.74
CLN3-201ENST00000333496 TNFRSF6BO95407 300 aa10.45□□□□□ -0.74
CLN3-201ENST00000333496 HINT1P49773 126 aaPredicted RBP10.45□□□□□ -0.74
CLN3-201ENST00000333496 COTL1Q14019 142 aa10.45□□□□□ -0.74
CLN3-201ENST00000333496 ORAOV1Q8WV07 137 aa10.45□□□□□ -0.74
CLN3-201ENST00000333496 BAALCQ8WXS3 180 aa10.45□□□□□ -0.74
CLN3-201ENST00000333496 RMI2Q96E14 147 aa10.45□□□□□ -0.74
CLN3-201ENST00000333496 TMEM243Q9BU79 118 aa10.45□□□□□ -0.74
CLN3-201ENST00000333496 KRTAP10-1P60331 282 aa10.44□□□□□ -0.74
CLN3-201ENST00000333496 NRACQ8N912 160 aa10.44□□□□□ -0.74
CLN3-201ENST00000333496 PRR34Q9NV39 138 aa10.44□□□□□ -0.74
CLN3-201ENST00000333496 TRBV6-5A0A0K0K1A5 114 aa10.44□□□□□ -0.74
CLN3-201ENST00000333496 SDHAF1A6NFY7 115 aa10.44□□□□□ -0.74
CLN3-201ENST00000333496 COX8AP10176 69 aa10.44□□□□□ -0.74
CLN3-201ENST00000333496 C20orf203Q8NBC4 194 aa10.44□□□□□ -0.74
CLN3-201ENST00000333496 IGLV4-60A0A075B6I1 120 aa10.43□□□□□ -0.74
CLN3-201ENST00000333496 A0A1B0GUV1 79 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 378.4 ms