RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 CITED1Q99966 193 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 LAMA1P25391 3075 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 DEFB1P60022 68 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 ZNF625Q96I27 306 aaPredicted RBP6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 ZNF479Q96JC4 524 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 C11orf21Q9P2W6 132 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 SORL1Q92673 2214 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 CHD6Q8TD26 2715 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 GDF5OSQ5U4N7 250 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 CFAP46Q8IYW2 2715 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 PRR9Q5T870 116 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 ZC2HC1BQ5TFG8 222 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 LINC01545Q5VT33 79 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 UFSP1Q6NVU6 142 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 CHCHD7Q9BUK0 85 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 WDFY4Q6ZS81 3184 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 UNC79Q9P2D8 2635 aa6.26□□□□□ -1.41
PDLIM5-201ENST00000317968 FLNAP21333 2647 aaKnown RBP6.25□□□□□ -1.41
PDLIM5-201ENST00000317968 C2CD3Q4AC94 2353 aa6.25□□□□□ -1.41
PDLIM5-201ENST00000317968 BVES-AS1Q5T3Y7 98 aa6.25□□□□□ -1.41
PDLIM5-201ENST00000317968 RNF185Q96GF1 192 aa6.25□□□□□ -1.41
PDLIM5-201ENST00000317968 TRBV27A0A0K0K1C4 114 aa6.24□□□□□ -1.41
PDLIM5-201ENST00000317968 TOMM6Q96B49 74 aa6.24□□□□□ -1.41
PDLIM5-201ENST00000317968 SETD2Q9BYW2 2564 aaPredicted RBP6.24□□□□□ -1.41
PDLIM5-201ENST00000317968 IGLV5-52A0A0A0MRZ9 124 aa6.24□□□□□ -1.41
PDLIM5-201ENST00000317968 IGKV2-24A0A0C4DH68 120 aa6.24□□□□□ -1.41
PDLIM5-201ENST00000317968 DSCR8Q96T75 97 aa6.24□□□□□ -1.41
PDLIM5-201ENST00000317968 G3V4G9 280 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 C20orf203Q8NBC4 194 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 C3orf84H3BNL1 204 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 NDUFB1O75438 58 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 A0A087WZ39 114 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 IFITM1P13164 125 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 LINC00269Q8N2A0 174 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 ITPR3Q14573 2671 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 LOC107984640A0A0U1RRK4 108 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 M0QY20 66 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 C14orf144Q96I85 54 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 Q9H8V8 135 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 CR1P17927 2039 aa6.23□□□□□ -1.41
PDLIM5-201ENST00000317968 J3QQQ9 107 aa6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 C9orf153Q5TBE3 101 aa6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 K7EP13 123 aa6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 K7ERU9 68 aa6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 Q6ZVH6 145 aa6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 RNASE13Q5GAN3 156 aaKnown RBP6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 CFAP126Q5VTH2 177 aa6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 CHCHD10Q8WYQ3 142 aaPredicted RBP6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 TRBV6-8A0A0A6YYG3 113 aa6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 RPL39LQ96EH5 51 aaKnown RBP6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 POLR2KP53803 58 aaKnown RBP6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 PYGO1Q9Y3Y4 419 aa6.22□□□□□ -1.41
PDLIM5-201ENST00000317968 FUSP35637 526 aaKnown RBP eCLIP6.21□□□□□ -1.41
PDLIM5-201ENST00000317968 SYCNQ0VAF6 134 aa6.21□□□□□ -1.41
PDLIM5-201ENST00000317968 GATA1P15976 413 aaPredicted RBP6.21□□□□□ -1.42
PDLIM5-201ENST00000317968 NRACQ8N912 160 aa6.21□□□□□ -1.42
PDLIM5-201ENST00000317968 MUC7Q8TAX7 377 aa6.21□□□□□ -1.42
PDLIM5-201ENST00000317968 EDN2P20800 178 aa6.21□□□□□ -1.42
PDLIM5-201ENST00000317968 CEMP1Q6PRD7 247 aaPredicted RBP6.21□□□□□ -1.42
PDLIM5-201ENST00000317968 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 KIR3DS1Q14943 382 aa6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 C1orf158Q8N1D5 194 aa6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 SPCS1Q9Y6A9 102 aa6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 FLNCQ14315 2725 aa6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 HIGD2BQ4VC39 106 aa6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 POM121L12Q8N7R1 296 aa6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 A0A1B0GV90 55 aa6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 LRCOL1A6NCL2 159 aa6.2□□□□□ -1.42
PDLIM5-201ENST00000317968 NUPR1O60356 82 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 RNASE8Q8TDE3 154 aaKnown RBP6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 DIRC1Q969H9 104 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 MRPL35Q9NZE8 188 aaKnown RBP6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 CENPEQ02224 2701 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 F8WDY8 70 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 DLEU1O43261 78 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 COX8AP10176 69 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 IGLV4-69A0A075B6H9 119 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 IGLC3P0DOY3 106 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 RETNQ9HD89 108 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 DEFB105AQ8NG35 78 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 VPS13AQ96RL7 3174 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 C2orf82Q6UX34 121 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 WFDC10AQ9H1F0 79 aa6.19□□□□□ -1.42
PDLIM5-201ENST00000317968 DKK2Q9UBU2 259 aa6.18□□□□□ -1.42
PDLIM5-201ENST00000317968 H0YGX0 51 aa6.18□□□□□ -1.42
PDLIM5-201ENST00000317968 SAMD5Q5TGI4 173 aa6.18□□□□□ -1.42
PDLIM5-201ENST00000317968 KIF25-AS1Q9Y6Z4 181 aa6.17□□□□□ -1.42
PDLIM5-201ENST00000317968 NEXN-AS1Q8NBZ9 246 aa6.17□□□□□ -1.42
PDLIM5-201ENST00000317968 LINC01546A6NGU7 62 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 MRPS36P82909 103 aaKnown RBP6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 SND1-IT1Q9HBX3 110 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 FAM19A1Q7Z5A9 133 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 OPRPNQ99935 248 aaPredicted RBP6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 C11orf86A6NJI1 115 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 C11orf72Q8NBR9 251 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 ORMDL1Q9P0S3 153 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 UBE2D4Q9Y2X8 147 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 AGRNO00468 2067 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 WIPF1O43516 503 aa6.16□□□□□ -1.42
PDLIM5-201ENST00000317968 NDUFS5O43920 106 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms