RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 LINC00242Q5T6M2 205 aa13.74□□□□□ -0.21
RTN4-201ENST00000317610 DGAT2L7PQ6IED9 249 aa13.73□□□□□ -0.21
RTN4-201ENST00000317610 Q8N2B8 174 aa13.73□□□□□ -0.21
RTN4-201ENST00000317610 Q9H8V8 135 aa13.73□□□□□ -0.21
RTN4-201ENST00000317610 IL17DQ8TAD2 202 aa13.71□□□□□ -0.21
RTN4-201ENST00000317610 CSDC2Q9Y534 153 aaKnown RBP13.71□□□□□ -0.21
RTN4-201ENST00000317610 C4orf3Q8WVX3 66 aa13.7□□□□□ -0.22
RTN4-201ENST00000317610 COPS9Q8WXC6 57 aa13.7□□□□□ -0.22
RTN4-201ENST00000317610 SMIM1B2RUZ4 78 aa13.7□□□□□ -0.22
RTN4-201ENST00000317610 COX7A2LO14548 114 aa13.7□□□□□ -0.22
RTN4-201ENST00000317610 DEFB114Q30KQ6 69 aa13.69□□□□□ -0.22
RTN4-201ENST00000317610 SHISA2Q6UWI4 295 aa13.69□□□□□ -0.22
RTN4-201ENST00000317610 MAPK1IP1LQ8NDC0 245 aa13.69□□□□□ -0.22
RTN4-201ENST00000317610 SVIPQ8NHG7 77 aa13.69□□□□□ -0.22
RTN4-201ENST00000317610 DYNLRB2Q8TF09 96 aa13.69□□□□□ -0.22
RTN4-201ENST00000317610 DOPEY1Q5JWR5 2465 aa13.69□□□□□ -0.22
RTN4-201ENST00000317610 CREBBPQ92793 2442 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 GAGE12JA6NER3 117 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 GAGE7O76087 117 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 GAGE12FP0CL80 117 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 GAGE12GP0CL81 117 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 GAGE12IP0CL82 117 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 LINC00694P0DN24 101 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 GAGE4Q13068 117 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 SOSTDC1Q6X4U4 206 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 PPDPFQ9H3Y8 114 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 MAP1AP78559 2803 aaPredicted RBP13.68□□□□□ -0.22
RTN4-201ENST00000317610 B5MCH6 92 aa13.68□□□□□ -0.22
RTN4-201ENST00000317610 ZNF625Q96I27 306 aaPredicted RBP13.68□□□□□ -0.22
RTN4-201ENST00000317610 SS18L2Q9UHA2 77 aa13.67□□□□□ -0.22
RTN4-201ENST00000317610 TRBV10-1A0A0K0K1A3 114 aa13.66□□□□□ -0.22
RTN4-201ENST00000317610 TRBV7-7A0A0K0K1E9 115 aa13.66□□□□□ -0.22
RTN4-201ENST00000317610 CCDC179H3BU77 68 aa13.65□□□□□ -0.22
RTN4-201ENST00000317610 F5H768 121 aa13.65□□□□□ -0.22
RTN4-201ENST00000317610 IGHV4-31P0DP07 118 aa13.65□□□□□ -0.22
RTN4-201ENST00000317610 NTM-AS1Q6ZSK4 140 aa13.65□□□□□ -0.22
RTN4-201ENST00000317610 C1orf158Q8N1D5 194 aa13.65□□□□□ -0.22
RTN4-201ENST00000317610 DAZ2Q13117 558 aaKnown RBP13.64□□□□□ -0.23
RTN4-201ENST00000317610 DAZ4Q86SG3 579 aaKnown RBP13.64□□□□□ -0.23
RTN4-201ENST00000317610 DAZ3Q9NR90 486 aaKnown RBP13.64□□□□□ -0.23
RTN4-201ENST00000317610 XCL2Q9UBD3 114 aa13.64□□□□□ -0.23
RTN4-201ENST00000317610 NDUFA7O95182 113 aa13.64□□□□□ -0.23
RTN4-201ENST00000317610 ACYP1P07311 99 aa13.64□□□□□ -0.23
RTN4-201ENST00000317610 HERV-K104P63124 156 aa13.64□□□□□ -0.23
RTN4-201ENST00000317610 RPL36AP83881 106 aaKnown RBP13.64□□□□□ -0.23
RTN4-201ENST00000317610 ODF3L2Q3SX64 289 aa13.64□□□□□ -0.23
RTN4-201ENST00000317610 RPL36ALQ969Q0 106 aaKnown RBP13.64□□□□□ -0.23
RTN4-201ENST00000317610 K7EQD1 137 aa13.63□□□□□ -0.23
RTN4-201ENST00000317610 CDC42SE2Q9NRR3 84 aa13.63□□□□□ -0.23
RTN4-201ENST00000317610 TRGV1A0A0A0MS02 117 aa13.63□□□□□ -0.23
RTN4-201ENST00000317610 PRIMA1Q86XR5 153 aa13.63□□□□□ -0.23
RTN4-201ENST00000317610 TRACP01848 142 aa13.62□□□□□ -0.23
RTN4-201ENST00000317610 TRAV13-1A0A0B4J241 112 aa13.62□□□□□ -0.23
RTN4-201ENST00000317610 A0A0U1RRA0 63 aa13.62□□□□□ -0.23
RTN4-201ENST00000317610 MEIG1Q5JSS6 88 aa13.61□□□□□ -0.23
RTN4-201ENST00000317610 CR1P17927 2039 aa13.61□□□□□ -0.23
RTN4-201ENST00000317610 TRAV25A0A0B4J276 109 aa13.6□□□□□ -0.23
RTN4-201ENST00000317610 CFAP46Q8IYW2 2715 aa13.59□□□□□ -0.23
RTN4-201ENST00000317610 USP9XQ93008 2570 aaPredicted RBP13.59□□□□□ -0.23
RTN4-201ENST00000317610 KHDC1LQ5JSQ8 128 aa13.59□□□□□ -0.23
RTN4-201ENST00000317610 STHQ8IWL8 128 aa13.59□□□□□ -0.23
RTN4-201ENST00000317610 PKD1L2Q7Z442 2459 aa13.59□□□□□ -0.23
RTN4-201ENST00000317610 Q6ZTI0 123 aa13.58□□□□□ -0.24
RTN4-201ENST00000317610 IMUPQ9GZP8 106 aa13.58□□□□□ -0.24
RTN4-201ENST00000317610 Q96MF0 132 aa13.57□□□□□ -0.24
RTN4-201ENST00000317610 PIEZO1Q92508 2521 aa13.57□□□□□ -0.24
RTN4-201ENST00000317610 C22orf24Q9Y442 160 aa13.57□□□□□ -0.24
RTN4-201ENST00000317610 ZANQ9Y493 2812 aa13.57□□□□□ -0.24
RTN4-201ENST00000317610 USP9YO00507 2555 aaPredicted RBP13.56□□□□□ -0.24
RTN4-201ENST00000317610 FAM222AQ5U5X8 452 aa13.56□□□□□ -0.24
RTN4-201ENST00000317610 FLNCQ14315 2725 aa13.56□□□□□ -0.24
RTN4-201ENST00000317610 MXRA5Q9NR99 2828 aa13.56□□□□□ -0.24
RTN4-201ENST00000317610 ANKRD17O75179 2603 aaKnown RBP13.56□□□□□ -0.24
RTN4-201ENST00000317610 PF4P02776 101 aa13.56□□□□□ -0.24
RTN4-201ENST00000317610 SDIM1Q6ZPB5 146 aa13.56□□□□□ -0.24
RTN4-201ENST00000317610 BAALC-AS2P0C853 105 aa13.55□□□□□ -0.24
RTN4-201ENST00000317610 FAM218AQ96MZ4 157 aa13.55□□□□□ -0.24
RTN4-201ENST00000317610 TMEM243Q9BU79 118 aa13.54□□□□□ -0.24
RTN4-201ENST00000317610 RPL28P46779 137 aaKnown RBP13.53□□□□□ -0.24
RTN4-201ENST00000317610 HIST2H2BCQ6DN03 193 aa13.53□□□□□ -0.24
RTN4-201ENST00000317610 HIST2H2BDQ6DRA6 164 aa13.53□□□□□ -0.24
RTN4-201ENST00000317610 SMCR5Q8TEV8 140 aa13.53□□□□□ -0.24
RTN4-201ENST00000317610 TRAV13-2A0A0B4J235 113 aa13.53□□□□□ -0.24
RTN4-201ENST00000317610 LINC00643Q86TS7 51 aa13.53□□□□□ -0.24
RTN4-201ENST00000317610 CSMD2Q7Z408 3487 aa13.53□□□□□ -0.24
RTN4-201ENST00000317610 UBE2L6O14933 153 aa13.51□□□□□ -0.25
RTN4-201ENST00000317610 CHCHD5Q9BSY4 110 aa13.51□□□□□ -0.25
RTN4-201ENST00000317610 COX7B2Q8TF08 81 aa13.5□□□□□ -0.25
RTN4-201ENST00000317610 NOP10Q9NPE3 64 aaKnown RBP13.5□□□□□ -0.25
RTN4-201ENST00000317610 FBN2P35556 2912 aa13.49□□□□□ -0.25
RTN4-201ENST00000317610 PLAC8L1A1L4L8 177 aa13.48□□□□□ -0.25
RTN4-201ENST00000317610 CRPP02741 224 aa13.48□□□□□ -0.25
RTN4-201ENST00000317610 TMEM86BQ8N661 226 aa13.48□□□□□ -0.25
RTN4-201ENST00000317610 IGKV2-28A0A075B6P5 120 aa13.48□□□□□ -0.25
RTN4-201ENST00000317610 IGKV2D-28P01615 120 aa13.48□□□□□ -0.25
RTN4-201ENST00000317610 INAFM2P0DMQ5 153 aa13.48□□□□□ -0.25
RTN4-201ENST00000317610 MIR7-3HGQ8N6C7 128 aa13.48□□□□□ -0.25
RTN4-201ENST00000317610 LINC00337Q8N6G1 96 aa13.48□□□□□ -0.25
RTN4-201ENST00000317610 GIG44P09565 113 aaPredicted RBP13.47□□□□□ -0.25
RTN4-201ENST00000317610 UTP20O75691 2785 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms