RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 H3BRM9 83 aa8.19□□□□□ -1.1
CUX1-202ENST00000292538 C9orf118A6NHY6 69 aa8.19□□□□□ -1.1
CUX1-202ENST00000292538 NPC2P61916 151 aa8.19□□□□□ -1.1
CUX1-202ENST00000292538 UBE2L6O14933 153 aa8.18□□□□□ -1.1
CUX1-202ENST00000292538 RBX1P62877 108 aa8.18□□□□□ -1.1
CUX1-202ENST00000292538 PIK3CD-AS1Q5SR53 167 aa8.18□□□□□ -1.1
CUX1-202ENST00000292538 C9orf66Q5T8R8 295 aa8.18□□□□□ -1.1
CUX1-202ENST00000292538 SAMD5Q5TGI4 173 aa8.18□□□□□ -1.1
CUX1-202ENST00000292538 CITED1Q99966 193 aa8.18□□□□□ -1.1
CUX1-202ENST00000292538 DAZ2Q13117 558 aaKnown RBP8.18□□□□□ -1.1
CUX1-202ENST00000292538 FAM104AQ969W3 186 aa8.18□□□□□ -1.1
CUX1-202ENST00000292538 DNAJC30Q96LL9 226 aa8.18□□□□□ -1.1
CUX1-202ENST00000292538 A0A0U1RRA0 63 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 PRSS2P07478 247 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 NTM-AS1Q6ZSK4 140 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 TIMM21Q9BVV7 248 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 GAGE6Q13070 117 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 SHISA2Q6UWI4 295 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 IL17DQ8TAD2 202 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 SPCS1Q9Y6A9 102 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 FBN1P35555 2871 aaKnown RBP8.17□□□□□ -1.1
CUX1-202ENST00000292538 COL6A5A8TX70 2615 aa8.17□□□□□ -1.1
CUX1-202ENST00000292538 TMEM223A0PJW6 202 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 H7C2G1 150 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 HTN3P15516 51 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 C12orf74Q32Q52 190 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 ZNF625Q96I27 306 aaPredicted RBP8.16□□□□□ -1.1
CUX1-202ENST00000292538 A0A0J9YY99 117 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 FABP2P12104 132 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 NOTCH1P46531 2555 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 IGHV3-30-3P0DP02 117 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 OXLD1Q5BKU9 147 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 NFE4Q86UQ8 179 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 MTURNQ8N3F0 131 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 PTH2Q96A98 100 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 CHCHD5Q9BSY4 110 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 TM2D2Q9BX73 214 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 SPANXA1Q9NS26 97 aa8.16□□□□□ -1.1
CUX1-202ENST00000292538 FAM110AQ9BQ89 295 aa8.15□□□□□ -1.1
CUX1-202ENST00000292538 CDKN2A-AS1Q9UH64 79 aa8.15□□□□□ -1.1
CUX1-202ENST00000292538 PYGO1Q9Y3Y4 419 aa8.15□□□□□ -1.1
CUX1-202ENST00000292538 PKD1L1Q8TDX9 2849 aa8.15□□□□□ -1.1
CUX1-202ENST00000292538 A0A1W2PPM0 123 aa8.15□□□□□ -1.11
CUX1-202ENST00000292538 COX6A2Q02221 97 aa8.15□□□□□ -1.11
CUX1-202ENST00000292538 AMELXQ99217 191 aa8.15□□□□□ -1.11
CUX1-202ENST00000292538 EDA2RQ9HAV5 297 aa8.15□□□□□ -1.11
CUX1-202ENST00000292538 TMEM262E9PQX1 116 aa8.14□□□□□ -1.11
CUX1-202ENST00000292538 UBE2D3P61077 147 aa8.14□□□□□ -1.11
CUX1-202ENST00000292538 UBE2D2P62837 147 aa8.14□□□□□ -1.11
CUX1-202ENST00000292538 DAZ4Q86SG3 579 aaKnown RBP8.14□□□□□ -1.11
CUX1-202ENST00000292538 OR5A1Q8NGJ0 315 aa8.14□□□□□ -1.11
CUX1-202ENST00000292538 DAZ3Q9NR90 486 aaKnown RBP8.14□□□□□ -1.11
CUX1-202ENST00000292538 LEPROTO15243 131 aa8.14□□□□□ -1.11
CUX1-202ENST00000292538 FAM222AQ5U5X8 452 aa8.14□□□□□ -1.11
CUX1-202ENST00000292538 GTF2H5Q6ZYL4 71 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 LOC107984156A0A0G2JMH3 177 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 TRBV10-1A0A0K0K1A3 114 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 INSL3P51460 131 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 FHL2Q14192 279 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 RNF151Q2KHN1 245 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 ARL17AQ8IVW1 177 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 DAND5Q8N907 189 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 TMEM243Q9BU79 118 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 PGPEP1Q9NXJ5 209 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 BAHCC1Q9P281 2608 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 GYPEP15421 78 aa8.13□□□□□ -1.11
CUX1-202ENST00000292538 MRPS36P82909 103 aaKnown RBP8.13□□□□□ -1.11
CUX1-202ENST00000292538 CLPSL2Q6UWE3 100 aa8.12□□□□□ -1.11
CUX1-202ENST00000292538 TMEM101Q96IK0 257 aa8.12□□□□□ -1.11
CUX1-202ENST00000292538 NDUFA12Q9UI09 145 aa8.12□□□□□ -1.11
CUX1-202ENST00000292538 IGLL5B9A064 214 aa8.12□□□□□ -1.11
CUX1-202ENST00000292538 C10orf126Q8N4M7 172 aa8.12□□□□□ -1.11
CUX1-202ENST00000292538 X6R8D5 127 aa8.12□□□□□ -1.11
CUX1-202ENST00000292538 UBE2D1P51668 147 aa8.11□□□□□ -1.11
CUX1-202ENST00000292538 TAL2Q16559 108 aa8.11□□□□□ -1.11
CUX1-202ENST00000292538 OVOL2Q9BRP0 275 aa8.11□□□□□ -1.11
CUX1-202ENST00000292538 TINCRA0A1B0GVN0 87 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 TRBV6-4A0A1B0GX49 114 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 C3orf56Q8N813 242 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 IGHV1-58A0A0C4DH39 117 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 H3BMG7 143 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 K7EP34 96 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 IGHV4-30-4P0DP06 118 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 MUSTN1Q8IVN3 82 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 TOMM7Q9P0U1 55 aa8.1□□□□□ -1.11
CUX1-202ENST00000292538 IGHV4-28A0A0C4DH34 117 aa8.09□□□□□ -1.11
CUX1-202ENST00000292538 LINC00242Q5T6M2 205 aa8.09□□□□□ -1.11
CUX1-202ENST00000292538 IGLV4-60A0A075B6I1 120 aa8.09□□□□□ -1.11
CUX1-202ENST00000292538 A0A0J9YXY3 114 aa8.09□□□□□ -1.11
CUX1-202ENST00000292538 VSIG2Q96IQ7 327 aa8.09□□□□□ -1.11
CUX1-202ENST00000292538 IGHV3-30P01768 117 aa8.09□□□□□ -1.12
CUX1-202ENST00000292538 IGHV3-30-5P0DP03 117 aa8.09□□□□□ -1.12
CUX1-202ENST00000292538 APOC4P55056 127 aa8.09□□□□□ -1.12
CUX1-202ENST00000292538 CDC42SE2Q9NRR3 84 aa8.09□□□□□ -1.12
CUX1-202ENST00000292538 F5H768 121 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 PAX4O43316 350 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 DAD1P61803 113 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 TRBV6-8A0A0A6YYG3 113 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 TMEM238C9JI98 176 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 SCGB1C2P0DMR2 95 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms