RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 MRPL35Q9NZE8 188 aaKnown RBP17.16■□□□□ 0.34
SSBP4-201ENST00000270061 VPS13DQ5THJ4 4388 aa17.16■□□□□ 0.34
SSBP4-201ENST00000270061 PRSS29PA6NIE9 313 aa17.15■□□□□ 0.34
SSBP4-201ENST00000270061 PMVKQ15126 192 aa17.15■□□□□ 0.34
SSBP4-201ENST00000270061 CHTOPQ9Y3Y2 248 aaKnown RBP17.15■□□□□ 0.34
SSBP4-201ENST00000270061 LINC00694P0DN24 101 aa17.14■□□□□ 0.33
SSBP4-201ENST00000270061 PLNP26678 52 aa17.14■□□□□ 0.33
SSBP4-201ENST00000270061 GTSF1LQ9H1H1 148 aa17.14■□□□□ 0.33
SSBP4-201ENST00000270061 DAD1P61803 113 aa17.13■□□□□ 0.33
SSBP4-201ENST00000270061 UQCR10Q9UDW1 63 aa17.13■□□□□ 0.33
SSBP4-201ENST00000270061 CRYBA4P53673 196 aa17.12■□□□□ 0.33
SSBP4-201ENST00000270061 CST9LQ9H4G1 147 aa17.12■□□□□ 0.33
SSBP4-201ENST00000270061 PRO0255Q9UI72 69 aa17.12■□□□□ 0.33
SSBP4-201ENST00000270061 LOC100131303A0A0U1RQF7 123 aa17.12■□□□□ 0.33
SSBP4-201ENST00000270061 SPANXA1Q9NS26 97 aa17.12■□□□□ 0.33
SSBP4-201ENST00000270061 PAPPA-AS1Q5QFB9 102 aa17.11■□□□□ 0.33
SSBP4-201ENST00000270061 IGLV4-3A0A075B6K6 122 aa17.1■□□□□ 0.33
SSBP4-201ENST00000270061 NTM-AS1Q6ZSK4 140 aa17.1■□□□□ 0.33
SSBP4-201ENST00000270061 TIMM21Q9BVV7 248 aa17.1■□□□□ 0.33
SSBP4-201ENST00000270061 UBE2D4Q9Y2X8 147 aa17.1■□□□□ 0.33
SSBP4-201ENST00000270061 STPG4Q8N801 248 aa17.09■□□□□ 0.33
SSBP4-201ENST00000270061 C14orf144Q96I85 54 aa17.09■□□□□ 0.33
SSBP4-201ENST00000270061 EPPK1P58107 5090 aaKnown RBP17.09■□□□□ 0.33
SSBP4-201ENST00000270061 ANKRD39Q53RE8 183 aa17.08■□□□□ 0.33
SSBP4-201ENST00000270061 ATP5G1P05496 136 aa17.07■□□□□ 0.32
SSBP4-201ENST00000270061 HTN3P15516 51 aa17.07■□□□□ 0.32
SSBP4-201ENST00000270061 FAM104AQ969W3 186 aa17.07■□□□□ 0.32
SSBP4-201ENST00000270061 IGKV2D-29A0A075B6S2 120 aaPredicted RBP17.07■□□□□ 0.32
SSBP4-201ENST00000270061 IGKV2-29A2NJV5 120 aaPredicted RBP17.07■□□□□ 0.32
SSBP4-201ENST00000270061 AMELXQ99217 191 aa17.07■□□□□ 0.32
SSBP4-201ENST00000270061 OPRPNQ99935 248 aaPredicted RBP17.07■□□□□ 0.32
SSBP4-201ENST00000270061 TMEM97Q5BJF2 176 aa17.06■□□□□ 0.32
SSBP4-201ENST00000270061 VCX2Q9H322 139 aa17.06■□□□□ 0.32
SSBP4-201ENST00000270061 DNAH6Q9C0G6 4158 aa17.06■□□□□ 0.32
SSBP4-201ENST00000270061 IGLV4-69A0A075B6H9 119 aa17.05■□□□□ 0.32
SSBP4-201ENST00000270061 COX8AP10176 69 aa17.05■□□□□ 0.32
SSBP4-201ENST00000270061 GYPEP15421 78 aa17.05■□□□□ 0.32
SSBP4-201ENST00000270061 ZC2HC1BQ5TFG8 222 aa17.05■□□□□ 0.32
SSBP4-201ENST00000270061 FRAS1Q86XX4 4008 aa17.05■□□□□ 0.32
SSBP4-201ENST00000270061 PAX4O43316 350 aa17.04■□□□□ 0.32
SSBP4-201ENST00000270061 MRPS36P82909 103 aaKnown RBP17.04■□□□□ 0.32
SSBP4-201ENST00000270061 SMAGPQ0VAQ4 97 aa17.04■□□□□ 0.32
SSBP4-201ENST00000270061 CSDC2Q9Y534 153 aaKnown RBP17.04■□□□□ 0.32
SSBP4-201ENST00000270061 H7C423 109 aa17.03■□□□□ 0.32
SSBP4-201ENST00000270061 MRPL52Q86TS9 123 aaKnown RBP17.03■□□□□ 0.32
SSBP4-201ENST00000270061 SLC25A34Q6PIV7 304 aa17.02■□□□□ 0.32
SSBP4-201ENST00000270061 TRBV25-1A0A075B6N4 114 aa17.02■□□□□ 0.31
SSBP4-201ENST00000270061 TMEM243Q9BU79 118 aa17.02■□□□□ 0.31
SSBP4-201ENST00000270061 NFE4Q86UQ8 179 aa17.01■□□□□ 0.31
SSBP4-201ENST00000270061 ATP6V0E2Q8NHE4 81 aa17.01■□□□□ 0.31
SSBP4-201ENST00000270061 VSIG2Q96IQ7 327 aa17.01■□□□□ 0.31
SSBP4-201ENST00000270061 TRBV6-8A0A0A6YYG3 113 aa17■□□□□ 0.31
SSBP4-201ENST00000270061 C11orf86A6NJI1 115 aa17■□□□□ 0.31
SSBP4-201ENST00000270061 CTAG1AP78358 180 aa17■□□□□ 0.31
SSBP4-201ENST00000270061 FGF6P10767 208 aa16.99■□□□□ 0.31
SSBP4-201ENST00000270061 HNRNPA3P51991 378 aaKnown RBP16.99■□□□□ 0.31
SSBP4-201ENST00000270061 DLEU1O43261 78 aa16.98■□□□□ 0.31
SSBP4-201ENST00000270061 DGAT2L7PQ6IED9 249 aa16.98■□□□□ 0.31
SSBP4-201ENST00000270061 MRPS16Q9Y3D3 137 aaKnown RBP16.98■□□□□ 0.31
SSBP4-201ENST00000270061 F5H768 121 aa16.97■□□□□ 0.31
SSBP4-201ENST00000270061 Q6ZUT4 128 aa16.97■□□□□ 0.31
SSBP4-201ENST00000270061 BOD1L2Q8IYS8 172 aa16.97■□□□□ 0.31
SSBP4-201ENST00000270061 DNAH10Q8IVF4 4471 aa16.96■□□□□ 0.31
SSBP4-201ENST00000270061 IGKV2D-26A0A0A0MRZ7 120 aa16.96■□□□□ 0.31
SSBP4-201ENST00000270061 UBE2L6O14933 153 aa16.96■□□□□ 0.31
SSBP4-201ENST00000270061 TRAV26-1A0A087WT03 109 aa16.95■□□□□ 0.3
SSBP4-201ENST00000270061 NMUP48645 174 aa16.95■□□□□ 0.3
SSBP4-201ENST00000270061 C2orf88Q9BSF0 95 aa16.94■□□□□ 0.3
SSBP4-201ENST00000270061 A0A0J9YY99 117 aa16.94■□□□□ 0.3
SSBP4-201ENST00000270061 ZNF25P17030 456 aaPredicted RBP16.94■□□□□ 0.3
SSBP4-201ENST00000270061 C15orf53Q8NAA6 179 aa16.94■□□□□ 0.3
SSBP4-201ENST00000270061 E9PLD3 99 aa16.93■□□□□ 0.3
SSBP4-201ENST00000270061 CHAC1Q9BUX1 264 aa16.93■□□□□ 0.3
SSBP4-201ENST00000270061 A0A0J9YXV3 536 aa16.92■□□□□ 0.3
SSBP4-201ENST00000270061 PCP2Q8IVA1 136 aa16.92■□□□□ 0.3
SSBP4-201ENST00000270061 CDC42SE2Q9NRR3 84 aa16.92■□□□□ 0.3
SSBP4-201ENST00000270061 RNASE13Q5GAN3 156 aaKnown RBP16.92■□□□□ 0.3
SSBP4-201ENST00000270061 AMMECR1LQ6DCA0 310 aa16.92■□□□□ 0.3
SSBP4-201ENST00000270061 SH2D6Q7Z4S9 175 aa16.92■□□□□ 0.3
SSBP4-201ENST00000270061 UBE2DNLQ8IWF7 75 aa16.92■□□□□ 0.3
SSBP4-201ENST00000270061 OR5A1Q8NGJ0 315 aa16.92■□□□□ 0.3
SSBP4-201ENST00000270061 HERVK_113P61574 105 aa16.91■□□□□ 0.3
SSBP4-201ENST00000270061 MRPL23Q16540 153 aaKnown RBP16.91■□□□□ 0.3
SSBP4-201ENST00000270061 TMEM101Q96IK0 257 aa16.91■□□□□ 0.3
SSBP4-201ENST00000270061 TP73-AS1Q9UF72 201 aa16.91■□□□□ 0.3
SSBP4-201ENST00000270061 TINCRA0A1B0GVN0 87 aa16.9■□□□□ 0.3
SSBP4-201ENST00000270061 SIVA1O15304 175 aa16.9■□□□□ 0.3
SSBP4-201ENST00000270061 UBE2D1P51668 147 aa16.9■□□□□ 0.3
SSBP4-201ENST00000270061 H3BNG1 76 aa16.89■□□□□ 0.3
SSBP4-201ENST00000270061 TMEM170BQ5T4T1 132 aa16.89■□□□□ 0.3
SSBP4-201ENST00000270061 ZNF22P17026 224 aaPredicted RBP16.89■□□□□ 0.29
SSBP4-201ENST00000270061 FAM19A3Q7Z5A8 133 aa16.89■□□□□ 0.29
SSBP4-201ENST00000270061 CHCHD5Q9BSY4 110 aa16.89■□□□□ 0.29
SSBP4-201ENST00000270061 BIRC6Q9NR09 4857 aa16.88■□□□□ 0.29
SSBP4-201ENST00000270061 M0R143 59 aa16.88■□□□□ 0.29
SSBP4-201ENST00000270061 GAGE6Q13070 117 aa16.88■□□□□ 0.29
SSBP4-201ENST00000270061 ICOSQ9Y6W8 199 aa16.88■□□□□ 0.29
SSBP4-201ENST00000270061 C2orf91Q6ZV80 131 aa16.87■□□□□ 0.29
SSBP4-201ENST00000270061 TIRAPP58753 221 aa16.87■□□□□ 0.29
SSBP4-201ENST00000270061 SNHG12Q9BXW3 62 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms