RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 LYRM9A8MSI8 78 aa13.89□□□□□ -0.19
SMARCC1-201ENST00000254480 C2CD3Q4AC94 2353 aa13.89□□□□□ -0.19
SMARCC1-201ENST00000254480 ZNF702PQ9H963 129 aa13.89□□□□□ -0.19
SMARCC1-201ENST00000254480 ATOX1O00244 68 aa13.88□□□□□ -0.19
SMARCC1-201ENST00000254480 MAPKAPK5-AS1Q8N8E1 139 aa13.88□□□□□ -0.19
SMARCC1-201ENST00000254480 PRO3102Q9H379 93 aa13.88□□□□□ -0.19
SMARCC1-201ENST00000254480 TEX49A0A1B0GTD5 131 aa13.88□□□□□ -0.19
SMARCC1-201ENST00000254480 ZNF22P17026 224 aaPredicted RBP13.88□□□□□ -0.19
SMARCC1-201ENST00000254480 WDR87Q6ZQQ6 2873 aa13.88□□□□□ -0.19
SMARCC1-201ENST00000254480 IGKV2-28A0A075B6P5 120 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 M0QY20 66 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 IGKV2D-28P01615 120 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 MBD6Q96DN6 1003 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 SPANXCQ9NY87 97 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 TRBV6-8A0A0A6YYG3 113 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 EDN2P20800 178 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 PRR9Q5T870 116 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 LINC01006Q8NI28 216 aa13.87□□□□□ -0.19
SMARCC1-201ENST00000254480 COL4A4P53420 1690 aaPredicted RBP13.86□□□□□ -0.19
SMARCC1-201ENST00000254480 PPDPFQ9H3Y8 114 aa13.86□□□□□ -0.19
SMARCC1-201ENST00000254480 CEP192Q8TEP8 1941 aa13.86□□□□□ -0.19
SMARCC1-201ENST00000254480 SDIM1Q6ZPB5 146 aa13.86□□□□□ -0.19
SMARCC1-201ENST00000254480 ODF3Q96PU9 254 aa13.85□□□□□ -0.19
SMARCC1-201ENST00000254480 RNF185Q96GF1 192 aa13.85□□□□□ -0.19
SMARCC1-201ENST00000254480 TMEM223A0PJW6 202 aa13.85□□□□□ -0.19
SMARCC1-201ENST00000254480 H3BT86 120 aa13.85□□□□□ -0.19
SMARCC1-201ENST00000254480 UPK3BQ9BT76 320 aa13.84□□□□□ -0.19
SMARCC1-201ENST00000254480 BPY2O14599 106 aa13.84□□□□□ -0.19
SMARCC1-201ENST00000254480 EBI3Q14213 229 aa13.84□□□□□ -0.19
SMARCC1-201ENST00000254480 SMIM9A6NGZ8 99 aa13.83□□□□□ -0.2
SMARCC1-201ENST00000254480 HRCT1Q6UXD1 115 aa13.83□□□□□ -0.2
SMARCC1-201ENST00000254480 OXLD1Q5BKU9 147 aa13.83□□□□□ -0.2
SMARCC1-201ENST00000254480 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.83□□□□□ -0.2
SMARCC1-201ENST00000254480 GAS8-AS1O95177 125 aa13.82□□□□□ -0.2
SMARCC1-201ENST00000254480 NAV3Q8IVL0 2385 aa13.82□□□□□ -0.2
SMARCC1-201ENST00000254480 C14orf177Q52M58 125 aa13.82□□□□□ -0.2
SMARCC1-201ENST00000254480 CLUHP3Q96NS8 147 aa13.82□□□□□ -0.2
SMARCC1-201ENST00000254480 C11orf21Q9P2W6 132 aa13.82□□□□□ -0.2
SMARCC1-201ENST00000254480 HCFC1P51610 2035 aa13.82□□□□□ -0.2
SMARCC1-201ENST00000254480 SHISA2Q6UWI4 295 aa13.81□□□□□ -0.2
SMARCC1-201ENST00000254480 IL17DQ8TAD2 202 aa13.81□□□□□ -0.2
SMARCC1-201ENST00000254480 A0A0J9YWU9 116 aa13.81□□□□□ -0.2
SMARCC1-201ENST00000254480 LINC00308Q8TCZ7 52 aa13.81□□□□□ -0.2
SMARCC1-201ENST00000254480 AVPP01185 164 aa13.81□□□□□ -0.2
SMARCC1-201ENST00000254480 EP400Q96L91 3159 aa13.8□□□□□ -0.2
SMARCC1-201ENST00000254480 G3V4G9 280 aa13.8□□□□□ -0.2
SMARCC1-201ENST00000254480 H3BQ85 93 aa13.8□□□□□ -0.2
SMARCC1-201ENST00000254480 IGLV2-11P01706 119 aa13.8□□□□□ -0.2
SMARCC1-201ENST00000254480 KRTAP10-9P60411 292 aa13.8□□□□□ -0.2
SMARCC1-201ENST00000254480 C1orf158Q8N1D5 194 aa13.8□□□□□ -0.2
SMARCC1-201ENST00000254480 MIFP14174 115 aa13.8□□□□□ -0.2
SMARCC1-201ENST00000254480 WFDC10BQ8IUB3 73 aa13.79□□□□□ -0.2
SMARCC1-201ENST00000254480 RNASE3P12724 160 aaKnown RBP13.79□□□□□ -0.2
SMARCC1-201ENST00000254480 RBX1P62877 108 aa13.79□□□□□ -0.2
SMARCC1-201ENST00000254480 C3orf84H3BNL1 204 aa13.79□□□□□ -0.2
SMARCC1-201ENST00000254480 C6orf99Q4VX62 202 aa13.79□□□□□ -0.2
SMARCC1-201ENST00000254480 PSMG3-AS1Q96PY0 264 aa13.79□□□□□ -0.2
SMARCC1-201ENST00000254480 KPRPQ5T749 579 aaPredicted RBP13.78□□□□□ -0.2
SMARCC1-201ENST00000254480 RPL37AP8A6NKH3 93 aa13.78□□□□□ -0.2
SMARCC1-201ENST00000254480 TRIAP1O43715 76 aa13.78□□□□□ -0.2
SMARCC1-201ENST00000254480 SPINK6Q6UWN8 80 aa13.78□□□□□ -0.2
SMARCC1-201ENST00000254480 NANOS2P60321 138 aaKnown RBP13.77□□□□□ -0.2
SMARCC1-201ENST00000254480 SYCNQ0VAF6 134 aa13.77□□□□□ -0.21
SMARCC1-201ENST00000254480 LY6G6CO95867 125 aa13.77□□□□□ -0.21
SMARCC1-201ENST00000254480 ENHOQ6UWT2 76 aa13.76□□□□□ -0.21
SMARCC1-201ENST00000254480 TRBV6-4A0A1B0GX49 114 aa13.76□□□□□ -0.21
SMARCC1-201ENST00000254480 MT-ATP8P03928 68 aa13.75□□□□□ -0.21
SMARCC1-201ENST00000254480 TSHBP01222 138 aa13.75□□□□□ -0.21
SMARCC1-201ENST00000254480 Q8N6K4 173 aa13.74□□□□□ -0.21
SMARCC1-201ENST00000254480 RETNQ9HD89 108 aa13.73□□□□□ -0.21
SMARCC1-201ENST00000254480 C9orf85Q96MD7 179 aa13.73□□□□□ -0.21
SMARCC1-201ENST00000254480 TRAV10A0A0B4J240 114 aa13.73□□□□□ -0.21
SMARCC1-201ENST00000254480 IBA57-AS1B1ANH7 110 aa13.72□□□□□ -0.21
SMARCC1-201ENST00000254480 C20orf197Q8N268 126 aa13.72□□□□□ -0.21
SMARCC1-201ENST00000254480 MPLKIPQ8TAP9 179 aa13.71□□□□□ -0.21
SMARCC1-201ENST00000254480 H7C423 109 aa13.71□□□□□ -0.21
SMARCC1-201ENST00000254480 NRACQ8N912 160 aa13.71□□□□□ -0.21
SMARCC1-201ENST00000254480 NDUFA7O95182 113 aa13.71□□□□□ -0.22
SMARCC1-201ENST00000254480 FSTL3O95633 263 aa13.71□□□□□ -0.22
SMARCC1-201ENST00000254480 LINC00643Q86TS7 51 aa13.71□□□□□ -0.22
SMARCC1-201ENST00000254480 CASC2Q6XLA1 102 aa13.7□□□□□ -0.22
SMARCC1-201ENST00000254480 CCKP06307 115 aa13.7□□□□□ -0.22
SMARCC1-201ENST00000254480 TRBV6-5A0A0K0K1A5 114 aa13.69□□□□□ -0.22
SMARCC1-201ENST00000254480 PLA2G2AP14555 144 aa13.69□□□□□ -0.22
SMARCC1-201ENST00000254480 U3KQK5 164 aa13.69□□□□□ -0.22
SMARCC1-201ENST00000254480 TRBV27A0A0K0K1C4 114 aa13.69□□□□□ -0.22
SMARCC1-201ENST00000254480 LINC00959A0A1B0GUT2 108 aa13.68□□□□□ -0.22
SMARCC1-201ENST00000254480 PDE6GP18545 87 aa13.68□□□□□ -0.22
SMARCC1-201ENST00000254480 SPANXB1Q9NS25 103 aaPredicted RBP13.68□□□□□ -0.22
SMARCC1-201ENST00000254480 SEC61GP60059 68 aa13.68□□□□□ -0.22
SMARCC1-201ENST00000254480 IGLV1-40P01703 118 aa13.67□□□□□ -0.22
SMARCC1-201ENST00000254480 SVIPQ8NHG7 77 aa13.67□□□□□ -0.22
SMARCC1-201ENST00000254480 UBE2D4Q9Y2X8 147 aa13.67□□□□□ -0.22
SMARCC1-201ENST00000254480 IGLV9-49A0A0B4J1Y8 123 aa13.67□□□□□ -0.22
SMARCC1-201ENST00000254480 IGHV4-30-4P0DP06 118 aa13.67□□□□□ -0.22
SMARCC1-201ENST00000254480 Q6ZQY7 126 aa13.66□□□□□ -0.22
SMARCC1-201ENST00000254480 GOLGB1Q14789 3259 aaKnown RBP13.66□□□□□ -0.22
SMARCC1-201ENST00000254480 J3KT08 172 aa13.66□□□□□ -0.22
SMARCC1-201ENST00000254480 BRK1Q8WUW1 75 aa13.66□□□□□ -0.22
SMARCC1-201ENST00000254480 PIEZO1Q92508 2521 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms