RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ECEL1O95672 775 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 SLFN14P0C7P3 912 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 ITIH2P19823 946 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 EFEMP1Q12805 493 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 SWI5Q1ZZU3 235 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 SPATS1Q496A3 300 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 ZNF385BQ569K4 471 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 TCERG1LQ5VWI1 586 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 PEAR1Q5VY43 1037 aaPredicted RBP1.71□□□□□ -2.14
VPS35-212ENST00000640313 NPAS4Q8IUM7 802 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 TMEM151BQ8IW70 566 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 ABHD4Q8TB40 342 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 PRIMPOLQ96LW4 560 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 PPP1R12CQ9BZL4 782 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 GGNBP2Q9H3C7 697 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 CARS2Q9HA77 564 aaKnown RBP1.71□□□□□ -2.14
VPS35-212ENST00000640313 PIDD1Q9HB75 910 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 DISC1Q9NRI5 854 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 GTF2IRD1Q9UHL9 959 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 OTOL1A6NHN0 477 aaPredicted RBP1.7□□□□□ -2.14
VPS35-212ENST00000640313 METTL12A8MUP2 240 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 EREGO14944 169 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 AKAP8O43823 692 aaKnown RBP1.7□□□□□ -2.14
VPS35-212ENST00000640313 PEX10O60683 326 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 SEMA7AO75326 666 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 SASH1O94885 1247 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 B3GALT4O96024 378 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 INSRRP14616 1297 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 PCSK2P16519 638 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 DLG4P78352 724 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 ID3Q02535 119 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 NAA30Q147X3 362 aaPredicted RBP1.7□□□□□ -2.14
VPS35-212ENST00000640313 CAPN12Q6ZSI9 719 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 CCNJLQ8IV13 435 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 TOP6BLQ8N6T0 577 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 WDR89Q96FK6 387 aaPredicted RBP1.7□□□□□ -2.14
VPS35-212ENST00000640313 SEMA3GQ9NS98 782 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 PCDHGC5Q9Y5F6 944 aa1.7□□□□□ -2.14
VPS35-212ENST00000640313 ACIN1Q9UKV3 1341 aaKnown RBP1.69□□□□□ -2.14
VPS35-212ENST00000640313 TEX51A0A1B0GUA7 166 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 PRMT3O60678 531 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 RNGTTO60942 597 aaKnown RBP1.69□□□□□ -2.14
VPS35-212ENST00000640313 PHACTR2O75167 634 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 TNFRSF21O75509 655 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 PDGFAP04085 211 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 RAC2P15153 192 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 LIG1P18858 919 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 MZF1P28698 734 aaPredicted RBP1.69□□□□□ -2.14
VPS35-212ENST00000640313 FAM69CQ0P6D2 419 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 AP3B2Q13367 1082 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 PDE3AQ14432 1141 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 TTLL4Q14679 1199 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 KIF4BQ2VIQ3 1234 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 TTC16Q8NEE8 873 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 EDEM1Q92611 657 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 GLMNQ92990 594 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 ALPK1Q96QP1 1244 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 MCOLN1Q9GZU1 580 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 KRT82Q9NSB4 513 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 CXXC1Q9P0U4 656 aaPredicted RBP1.69□□□□□ -2.14
VPS35-212ENST00000640313 CNOT11Q9UKZ1 510 aaKnown RBP1.69□□□□□ -2.14
VPS35-212ENST00000640313 CNOT6Q9ULM6 557 aaKnown RBP1.69□□□□□ -2.14
VPS35-212ENST00000640313 KCTD3Q9Y597 815 aa1.69□□□□□ -2.14
VPS35-212ENST00000640313 MYOCOSA0A1B0GUC4 107 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 A6NHS1 94 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 GNAT3A8MTJ3 354 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 RFXAPO00287 272 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 ZNF862O60290 1169 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 HPXP02790 462 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 NEFMP07197 916 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 HCLS1P14317 486 aaPredicted RBP1.68□□□□□ -2.14
VPS35-212ENST00000640313 LMOD1P29536 600 aaPredicted RBP1.68□□□□□ -2.14
VPS35-212ENST00000640313 GRIA4P48058 902 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 HNRNPUQ00839 825 aaKnown RBP eCLIP1.68□□□□□ -2.14
VPS35-212ENST00000640313 DNM1Q05193 864 aaKnown RBP1.68□□□□□ -2.14
VPS35-212ENST00000640313 PUM1Q14671 1186 aaKnown RBP eCLIP1.68□□□□□ -2.14
VPS35-212ENST00000640313 SPRED3Q2MJR0 410 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 C8orf34Q49A92 452 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 C22orf34Q6ZV56 151 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 ATCAYQ86WG3 371 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 IRF2BP1Q8IU81 584 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 PHF6Q8IWS0 365 aaKnown RBP eCLIP1.68□□□□□ -2.14
VPS35-212ENST00000640313 SNX29Q8TEQ0 813 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 MYLIPQ8WY64 445 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 ISL2Q96A47 359 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 HSPA12BQ96MM6 686 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 TEPSINQ96N21 525 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 TCF12Q99081 682 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 CCDC86Q9H6F5 360 aaKnown RBP1.68□□□□□ -2.14
VPS35-212ENST00000640313 ATP13A1Q9HD20 1204 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 GCM1Q9NP62 436 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 PRDM10Q9NQV6 1147 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 LATS2Q9NRM7 1088 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 AMOTL2Q9Y2J4 779 aa1.68□□□□□ -2.14
VPS35-212ENST00000640313 A0A1W2PP55 124 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 ZC3H12DA2A288 527 aaKnown RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 EOMESO95936 686 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 ITPKAP23677 461 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 ERVK-24P63145 666 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 ZXDAP98168 799 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms