RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 RHBDL3P58872 404 aa23.46■■□□□ 1.35
UPF1-212ENST00000601689 SLC9C2Q5TAH2 1124 aa23.46■■□□□ 1.35
UPF1-212ENST00000601689 EXOC6Q8TAG9 804 aa23.46■■□□□ 1.35
UPF1-212ENST00000601689 ZNF384Q8TF68 577 aa23.46■■□□□ 1.35
UPF1-212ENST00000601689 WRNIP1Q96S55 665 aa23.46■■□□□ 1.35
UPF1-212ENST00000601689 ANTXR1Q9H6X2 564 aa23.46■■□□□ 1.35
UPF1-212ENST00000601689 DOCK2Q92608 1830 aa23.45■■□□□ 1.34
UPF1-212ENST00000601689 WDHD1O75717 1129 aaPredicted RBP23.45■■□□□ 1.34
UPF1-212ENST00000601689 INHBEP58166 350 aa23.45■■□□□ 1.34
UPF1-212ENST00000601689 LRRFIP1Q32MZ4 808 aaKnown RBP23.45■■□□□ 1.34
UPF1-212ENST00000601689 MIGA2Q7L4E1 593 aa23.45■■□□□ 1.34
UPF1-212ENST00000601689 TTC41PQ6P2S7 1318 aa23.44■■□□□ 1.34
UPF1-212ENST00000601689 MANSC4A6NHS7 340 aaPredicted RBP23.44■■□□□ 1.34
UPF1-212ENST00000601689 SPRYD7Q5W111 196 aa23.44■■□□□ 1.34
UPF1-212ENST00000601689 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.44■■□□□ 1.34
UPF1-212ENST00000601689 DHX36Q9H2U1 1008 aaKnown RBP23.44■■□□□ 1.34
UPF1-212ENST00000601689 USP5P45974 858 aa23.43■■□□□ 1.34
UPF1-212ENST00000601689 MKRN3Q13064 507 aaKnown RBP23.43■■□□□ 1.34
UPF1-212ENST00000601689 CDAN1Q8IWY9 1227 aa23.43■■□□□ 1.34
UPF1-212ENST00000601689 SH3RF3Q8TEJ3 882 aaPredicted RBP23.43■■□□□ 1.34
UPF1-212ENST00000601689 TRIM34Q9BYJ4 488 aa23.43■■□□□ 1.34
UPF1-212ENST00000601689 FOXN1O15353 648 aa23.42■■□□□ 1.34
UPF1-212ENST00000601689 OTUD7BQ6GQQ9 843 aa23.42■■□□□ 1.34
UPF1-212ENST00000601689 TGFBRAP1Q8WUH2 860 aa23.42■■□□□ 1.34
UPF1-212ENST00000601689 WNK4Q96J92 1243 aa23.42■■□□□ 1.34
UPF1-212ENST00000601689 CLMNQ96JQ2 1002 aa23.42■■□□□ 1.34
UPF1-212ENST00000601689 OSBPL5Q9H0X9 879 aaPredicted RBP23.42■■□□□ 1.34
UPF1-212ENST00000601689 ELP3Q9H9T3 547 aa23.42■■□□□ 1.34
UPF1-212ENST00000601689 MAGEB6P1A0A0J9YX57 407 aa23.41■■□□□ 1.34
UPF1-212ENST00000601689 GLRX3O76003 335 aaKnown RBP23.41■■□□□ 1.34
UPF1-212ENST00000601689 VGLL4Q14135 290 aa23.41■■□□□ 1.34
UPF1-212ENST00000601689 MIGA1Q8NAN2 632 aa23.41■■□□□ 1.34
UPF1-212ENST00000601689 DDX4Q9NQI0 724 aaKnown RBP23.41■■□□□ 1.34
UPF1-212ENST00000601689 SAGE1Q9NXZ1 904 aa23.41■■□□□ 1.34
UPF1-212ENST00000601689 ALDH1A1P00352 501 aa23.4■■□□□ 1.34
UPF1-212ENST00000601689 HLA-DOAP06340 250 aa23.4■■□□□ 1.34
UPF1-212ENST00000601689 PDE6AP16499 860 aa23.4■■□□□ 1.34
UPF1-212ENST00000601689 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.4■■□□□ 1.34
UPF1-212ENST00000601689 ZFPM1Q8IX07 1006 aa23.4■■□□□ 1.34
UPF1-212ENST00000601689 OPTNQ96CV9 577 aa23.4■■□□□ 1.34
UPF1-212ENST00000601689 PI4KBQ9UBF8 816 aa23.4■■□□□ 1.34
UPF1-212ENST00000601689 RFX7Q2KHR2 1363 aa23.4■■□□□ 1.34
UPF1-212ENST00000601689 ZNF532Q9HCE3 1301 aa23.39■■□□□ 1.34
UPF1-212ENST00000601689 COL2A1P02458 1487 aaPredicted RBP23.39■■□□□ 1.34
UPF1-212ENST00000601689 MX1P20591 662 aa23.39■■□□□ 1.33
UPF1-212ENST00000601689 TM4SF4P48230 202 aa23.39■■□□□ 1.33
UPF1-212ENST00000601689 ADGRA1Q86SQ6 560 aa23.39■■□□□ 1.33
UPF1-212ENST00000601689 ERO1BQ86YB8 467 aa23.39■■□□□ 1.33
UPF1-212ENST00000601689 ZIC5Q96T25 663 aa23.39■■□□□ 1.33
UPF1-212ENST00000601689 CRNKL1Q9BZJ0 848 aaKnown RBP23.39■■□□□ 1.33
UPF1-212ENST00000601689 PRDM10Q9NQV6 1147 aa23.39■■□□□ 1.33
UPF1-212ENST00000601689 MYH7P12883 1935 aa23.39■■□□□ 1.33
UPF1-212ENST00000601689 ATRNL1Q5VV63 1379 aa23.39■■□□□ 1.33
UPF1-212ENST00000601689 OTOFQ9HC10 1997 aa23.38■■□□□ 1.33
UPF1-212ENST00000601689 DDTLA6NHG4 134 aaPredicted RBP23.38■■□□□ 1.33
UPF1-212ENST00000601689 TBC1D12O60347 775 aa23.38■■□□□ 1.33
UPF1-212ENST00000601689 MAPKAPK5Q8IW41 473 aa23.38■■□□□ 1.33
UPF1-212ENST00000601689 DDRGK1Q96HY6 314 aa23.38■■□□□ 1.33
UPF1-212ENST00000601689 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.38■■□□□ 1.33
UPF1-212ENST00000601689 PICK1Q9NRD5 415 aa23.38■■□□□ 1.33
UPF1-212ENST00000601689 HERC5Q9UII4 1024 aaKnown RBP23.38■■□□□ 1.33
UPF1-212ENST00000601689 GTF2A2P52657 109 aa23.37■■□□□ 1.33
UPF1-212ENST00000601689 LBX1P52954 281 aa23.37■■□□□ 1.33
UPF1-212ENST00000601689 DYNLL1P63167 89 aaKnown RBP23.37■■□□□ 1.33
UPF1-212ENST00000601689 CRACR2BQ8N4Y2 399 aaPredicted RBP23.37■■□□□ 1.33
UPF1-212ENST00000601689 ZKSCAN4Q969J2 545 aaPredicted RBP23.37■■□□□ 1.33
UPF1-212ENST00000601689 EDC3Q96F86 508 aaKnown RBP23.37■■□□□ 1.33
UPF1-212ENST00000601689 OTUD5Q96G74 571 aa23.37■■□□□ 1.33
UPF1-212ENST00000601689 ZNF112Q9UJU3 913 aa23.37■■□□□ 1.33
UPF1-212ENST00000601689 FLT1P17948 1338 aa23.36■■□□□ 1.33
UPF1-212ENST00000601689 FOCADQ5VW36 1801 aa23.36■■□□□ 1.33
UPF1-212ENST00000601689 SPDYE5A6NIY4 337 aa23.36■■□□□ 1.33
UPF1-212ENST00000601689 TRPA1O75762 1119 aa23.36■■□□□ 1.33
UPF1-212ENST00000601689 ZFYP08048 801 aaPredicted RBP23.36■■□□□ 1.33
UPF1-212ENST00000601689 ADD2P35612 726 aa23.36■■□□□ 1.33
UPF1-212ENST00000601689 IRX6P78412 446 aaPredicted RBP23.36■■□□□ 1.33
UPF1-212ENST00000601689 PPATQ06203 517 aa23.36■■□□□ 1.33
UPF1-212ENST00000601689 UBE3CQ15386 1083 aa23.36■■□□□ 1.33
UPF1-212ENST00000601689 FOXP4Q8IVH2 680 aaPredicted RBP23.36■■□□□ 1.33
UPF1-212ENST00000601689 RNF186Q9NXI6 227 aa23.36■■□□□ 1.33
UPF1-212ENST00000601689 CDK5RAP2Q96SN8 1893 aa23.35■■□□□ 1.33
UPF1-212ENST00000601689 HSPA8P11142 646 aaKnown RBP23.35■■□□□ 1.33
UPF1-212ENST00000601689 B4GALNT3Q6L9W6 998 aa23.35■■□□□ 1.33
UPF1-212ENST00000601689 SH3BP5LQ7L8J4 393 aa23.35■■□□□ 1.33
UPF1-212ENST00000601689 TTC6Q86TZ1 520 aa23.35■■□□□ 1.33
UPF1-212ENST00000601689 SMC5Q8IY18 1101 aa23.35■■□□□ 1.33
UPF1-212ENST00000601689 AMOTL1Q8IY63 956 aa23.35■■□□□ 1.33
UPF1-212ENST00000601689 KBTBD3Q8NAB2 608 aa23.35■■□□□ 1.33
UPF1-212ENST00000601689 MYH1P12882 1939 aa23.35■■□□□ 1.33
UPF1-212ENST00000601689 CTNND1O60716 968 aaKnown RBP23.34■■□□□ 1.33
UPF1-212ENST00000601689 INPP5BP32019 993 aa23.34■■□□□ 1.33
UPF1-212ENST00000601689 MAP3K10Q02779 954 aa23.34■■□□□ 1.33
UPF1-212ENST00000601689 NOL9Q5SY16 702 aaKnown RBP23.34■■□□□ 1.33
UPF1-212ENST00000601689 SNCAIPQ9Y6H5 919 aa23.34■■□□□ 1.33
UPF1-212ENST00000601689 PPIL2Q13356 520 aa23.33■■□□□ 1.33
UPF1-212ENST00000601689 SNAPC2Q13487 334 aa23.33■■□□□ 1.33
UPF1-212ENST00000601689 SCYL3Q8IZE3 742 aa23.33■■□□□ 1.33
UPF1-212ENST00000601689 LNPKQ9C0E8 428 aa23.33■■□□□ 1.33
UPF1-212ENST00000601689 POLR3DP05423 398 aaPredicted RBP23.32■■□□□ 1.32
UPF1-212ENST00000601689 CETPP11597 493 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms