RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 USP5P45974 858 aa17.5■□□□□ 0.39
SHKBP1-211ENST00000595945 CFAP100Q494V2 611 aa17.5■□□□□ 0.39
SHKBP1-211ENST00000595945 BLOC1S2Q6QNY1 142 aa17.5■□□□□ 0.39
SHKBP1-211ENST00000595945 USP40Q9NVE5 1235 aa17.5■□□□□ 0.39
SHKBP1-211ENST00000595945 ARPP21Q9UBL0 812 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-211ENST00000595945 HDAC9Q9UKV0 1011 aa17.5■□□□□ 0.39
SHKBP1-211ENST00000595945 CYP46A1Q9Y6A2 500 aa17.5■□□□□ 0.39
SHKBP1-211ENST00000595945 FLT1P17948 1338 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 USP17L12C9JPN9 530 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 USP17L21D6R901 530 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 NPM3O75607 178 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 ZNF280AP59817 542 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 EXOSC10Q01780 885 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 CTDSPL2Q05D32 466 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 BECN1Q14457 450 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 MAPKAPK5Q8IW41 473 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 MB21D2Q8IYB1 491 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 STAG1Q8WVM7 1258 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 DPF2Q92785 391 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 ROBO3Q96MS0 1386 aa17.49■□□□□ 0.39
SHKBP1-211ENST00000595945 CYP2D7A0A087X1C5 515 aa17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 SPDYE2BA6NHP3 402 aa17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 HMGB1P09429 215 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 FGRP09769 529 aa17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 SPDYE6P0CI01 402 aa17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 AKNAD1Q5T1N1 836 aa17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 C12orf60Q5U649 245 aa17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 IDI2Q9BXS1 227 aa17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 DDX4Q9NQI0 724 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-211ENST00000595945 NEDD4P46934 1319 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 MINDY4BA8MYZ0 360 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 SMIM22K7EJ46 135 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 CYP2D6P10635 497 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 MCM2P49736 904 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 GMPSP49915 693 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 RBM5P52756 815 aaKnown RBP eCLIP17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 DHX32Q7L7V1 743 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 HSCBQ8IWL3 235 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 OGFOD1Q8N543 542 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 NCOA7Q8NI08 942 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 NKX2-3Q8TAU0 364 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 PRMT6Q96LA8 375 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 PDRG1Q9NUG6 133 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 MCM9Q9NXL9 1143 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 WDR19Q8NEZ3 1342 aa17.47■□□□□ 0.39
SHKBP1-211ENST00000595945 COL2A1P02458 1487 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-211ENST00000595945 EVX2Q03828 476 aa17.46■□□□□ 0.39
SHKBP1-211ENST00000595945 DLGAP5Q15398 846 aa17.46■□□□□ 0.39
SHKBP1-211ENST00000595945 RNF41Q9H4P4 317 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-211ENST00000595945 RNF181Q9P0P0 153 aa17.46■□□□□ 0.39
SHKBP1-211ENST00000595945 SHTN1A0MZ66 631 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 K7ELQ4 463 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 GRIN3BO60391 1043 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 PCP11498 1178 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 AK2P54819 239 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 ANTXR2P58335 489 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 NFIAQ12857 509 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 C9orf131Q5VYM1 1079 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 MFSD6Q6ZSS7 791 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 GPC2Q8N158 579 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 FBXL16Q8N461 479 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 AGXT2Q9BYV1 514 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 OSBPL5Q9H0X9 879 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 CNNM2Q9H8M5 875 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 INCENPQ9NQS7 918 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 FAM198AQ9UFP1 575 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 GJA3Q9Y6H8 435 aa17.45■□□□□ 0.38
SHKBP1-211ENST00000595945 ORC4O43929 436 aa17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 TRDNQ13061 729 aa17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 TOB2Q14106 344 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 GPR162Q16538 588 aa17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 SPDYE2Q495Y8 402 aa17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 TCEANC2Q96MN5 208 aa17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 KRT23Q9C075 422 aa17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 TDRD3Q9H7E2 651 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 MYOZ2Q9NPC6 264 aa17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 ZNF70Q9UC06 446 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 SAP30BPQ9UHR5 308 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 POLR2AP24928 1970 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-211ENST00000595945 ENTPD3O75355 529 aa17.43■□□□□ 0.38
SHKBP1-211ENST00000595945 SLC4A3P48751 1232 aa17.43■□□□□ 0.38
SHKBP1-211ENST00000595945 PLCD1P51178 756 aa17.43■□□□□ 0.38
SHKBP1-211ENST00000595945 FKBP1CQ5VVH2 108 aa17.43■□□□□ 0.38
SHKBP1-211ENST00000595945 CYB5R4Q7L1T6 521 aa17.43■□□□□ 0.38
SHKBP1-211ENST00000595945 RALYLQ86SE5 291 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-211ENST00000595945 MICALL2Q8IY33 904 aa17.43■□□□□ 0.38
SHKBP1-211ENST00000595945 CNOT7Q9UIV1 285 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-211ENST00000595945 B4E1Z4 1266 aa17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 POLR3DP05423 398 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 SLC3A2P08195 630 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 MCM5P33992 734 aa17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 NT5C2P49902 561 aa17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 PICALMQ13492 652 aa17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 Q6ZUG5 572 aa17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 ZFPM1Q8IX07 1006 aa17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 AMOTL1Q8IY63 956 aa17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 GREB1LQ9C091 1923 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 ZC3H4Q9UPT8 1303 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-211ENST00000595945 ATRNL1Q5VV63 1379 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms