RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 KRT83P78385 493 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 PSMD2Q13200 908 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 RNF217Q8TC41 542 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 RPGRIP1Q96KN7 1286 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 SLF1Q9BQI6 1058 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 KCNG1Q9UIX4 513 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 CDKL5O76039 1030 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 ADAMTS2O95450 1211 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 IDEP14735 1019 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 NDUFA8P51970 172 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 CRYMQ14894 314 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 CHST3Q7LGC8 479 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 TMTC1Q8IUR5 882 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 EGFL6Q8IUX8 553 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 REXO1L1PQ8IX06 675 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 DHX40Q8IX18 779 aaKnown RBP13.84□□□□□ -0.19
LIG1-207ENST00000594759 LMNTD2Q8IXW0 634 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 PCDHA7Q9UN72 937 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 CLTCL1P53675 1640 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 PTCH1Q13635 1447 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 EXOC5O00471 708 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 PAX7P23759 505 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 HOXC9P31274 260 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 GGCXP38435 758 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 NAA16Q6N069 864 aaPredicted RBP13.84□□□□□ -0.19
LIG1-207ENST00000594759 PRPF38AQ8NAV1 312 aaKnown RBP13.84□□□□□ -0.19
LIG1-207ENST00000594759 NCOA5Q9HCD5 579 aaKnown RBP13.84□□□□□ -0.19
LIG1-207ENST00000594759 KIF5AQ12840 1032 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 PDCLQ13371 301 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 AMOTQ4VCS5 1084 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 TTC14Q96N46 770 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 YIPF3Q9GZM5 350 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 CHPF2Q9P2E5 772 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 STAP2Q9UGK3 403 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 RCOR1Q9UKL0 485 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 IQGAP3Q86VI3 1631 aa13.84□□□□□ -0.19
LIG1-207ENST00000594759 SAMD1Q6SPF0 538 aaPredicted RBP13.83□□□□□ -0.19
LIG1-207ENST00000594759 CACNA2D3Q8IZS8 1091 aa13.83□□□□□ -0.19
LIG1-207ENST00000594759 FLT4P35916 1363 aa13.83□□□□□ -0.19
LIG1-207ENST00000594759 MYO1BO43795 1136 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 TACC1O75410 805 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 LACTBP83111 547 aaPredicted RBP13.83□□□□□ -0.2
LIG1-207ENST00000594759 CCDC96Q2M329 555 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 VSTM4Q8IW00 320 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 GOLGA8BA8MQT2 603 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 ATP5J2-PTCD1G3V325 749 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 MEFVO15553 781 aaPredicted RBP13.83□□□□□ -0.2
LIG1-207ENST00000594759 MIEF2Q96C03 454 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 IKBKBO14920 756 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 BEND6Q5SZJ8 279 aaPredicted RBP13.83□□□□□ -0.2
LIG1-207ENST00000594759 KANK3Q6NY19 840 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 KAT14Q9H8E8 782 aa13.83□□□□□ -0.2
LIG1-207ENST00000594759 IRAK1P51617 712 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 MXRA7P84157 204 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 SF3A3Q12874 501 aaKnown RBP eCLIP13.82□□□□□ -0.22e-6■■■■□ 21
LIG1-207ENST00000594759 HNRNPLLQ8WVV9 542 aaKnown RBP13.82□□□□□ -0.2
LIG1-207ENST00000594759 TCP11Q8WWU5 503 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 MYD88Q99836 296 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 ACTR5Q9H9F9 607 aaPredicted RBP13.82□□□□□ -0.2
LIG1-207ENST00000594759 RWDD2BP57060 319 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 CAPRIN2Q6IMN6 1127 aaKnown RBP13.82□□□□□ -0.2
LIG1-207ENST00000594759 EDC4Q6P2E9 1401 aaKnown RBP13.82□□□□□ -0.2
LIG1-207ENST00000594759 CYP26C1Q6V0L0 522 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 ABCC3O15438 1527 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 CHL1O00533 1208 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 NBPF20Q3BBV1 942 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 TOGARAM2Q6ZUX3 1019 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 CADPS2Q86UW7 1296 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 LLPHQ9BRT6 129 aaKnown RBP13.82□□□□□ -0.2
LIG1-207ENST00000594759 PPP1R12CQ9BZL4 782 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 DBF4Q9UBU7 674 aaPredicted RBP13.82□□□□□ -0.2
LIG1-207ENST00000594759 PRR36Q9H6K5 1346 aa13.82□□□□□ -0.2
LIG1-207ENST00000594759 HECW2Q9P2P5 1572 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 CCDC93Q567U6 631 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 HIBCHQ6NVY1 386 aaPredicted RBP13.81□□□□□ -0.2
LIG1-207ENST00000594759 TRMT44Q8IYL2 757 aaKnown RBP13.81□□□□□ -0.2
LIG1-207ENST00000594759 RIN2Q8WYP3 895 aaPredicted RBP13.81□□□□□ -0.2
LIG1-207ENST00000594759 SAMD15Q9P1V8 674 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 CROCC2H7BZ55 1655 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 C8orf74Q6P047 294 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 STAG1Q8WVM7 1258 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 CDC5LQ99459 802 aaKnown RBP13.81□□□□□ -0.2
LIG1-207ENST00000594759 UBAC1Q9BSL1 405 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 L1RE1Q9UN81 338 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 MAP3K2Q9Y2U5 619 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 MACROD2A1Z1Q3 448 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 TRIM68Q6AZZ1 485 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 NCAPH2Q6IBW4 605 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 BRAPQ7Z569 592 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 PARP9Q8IXQ6 854 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 PIK3R5Q8WYR1 880 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 AIDAQ96BJ3 306 aa13.81□□□□□ -0.2
LIG1-207ENST00000594759 IRX2Q9BZI1 471 aaPredicted RBP13.81□□□□□ -0.2
LIG1-207ENST00000594759 PHAXQ9H814 394 aaKnown RBP13.81□□□□□ -0.2
LIG1-207ENST00000594759 XBP1P17861 261 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 KRT9P35527 623 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 ATP11AP98196 1134 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 ANO1Q5XXA6 986 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 ROBO2Q9HCK4 1378 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 MYOM2P54296 1465 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms