RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ST5P78524 1137 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 ANKRD18AQ8IVF6 992 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 MRPS27Q92552 414 aaKnown RBP15.35■□□□□ 0.05
VPS4A-204ENST00000566354 RNF216Q9NWF9 866 aaPredicted RBP15.35■□□□□ 0.05
VPS4A-204ENST00000566354 CGNQ9P2M7 1197 aaKnown RBP15.35■□□□□ 0.05
VPS4A-204ENST00000566354 SPDYE4A6NLX3 237 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 PDE8BO95263 885 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 PTPN14Q15678 1187 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 NYAP1Q6ZVC0 841 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 CCDC125Q86Z20 511 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 FMR1NBQ8N0W7 255 aaPredicted RBP15.35■□□□□ 0.05
VPS4A-204ENST00000566354 KCND1Q9NSA2 647 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 PCDHA7Q9UN72 937 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 QSER1Q2KHR3 1735 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 MROH5Q6ZUA9 1318 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 CCDC69A6NI79 296 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 GSDMDP57764 484 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 SDF4Q9BRK5 362 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 OGFRQ9NZT2 677 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 AKAP2Q9Y2D5 859 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 MAST3O60307 1309 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 IFIT1P09914 478 aaKnown RBP15.34■□□□□ 0.05
VPS4A-204ENST00000566354 ARID5BQ14865 1188 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 SLFNL1Q499Z3 407 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.34■□□□□ 0.05
VPS4A-204ENST00000566354 SECISBP2LQ93073 1101 aaKnown RBP15.34■□□□□ 0.05
VPS4A-204ENST00000566354 XAGE2Q96GT9 111 aa15.34■□□□□ 0.05
VPS4A-204ENST00000566354 FDPSP14324 419 aaKnown RBP15.33■□□□□ 0.05
VPS4A-204ENST00000566354 RPS8P62241 208 aaKnown RBP15.33■□□□□ 0.05
VPS4A-204ENST00000566354 GUCY1B3Q02153 619 aa15.33■□□□□ 0.05
VPS4A-204ENST00000566354 LRRFIP1Q32MZ4 808 aaKnown RBP15.33■□□□□ 0.05
VPS4A-204ENST00000566354 FILIP1Q7Z7B0 1213 aa15.33■□□□□ 0.05
VPS4A-204ENST00000566354 IMPACTQ9P2X3 320 aa15.33■□□□□ 0.05
VPS4A-204ENST00000566354 CTNNA3Q9UI47 895 aa15.33■□□□□ 0.05
VPS4A-204ENST00000566354 ANKRD31Q8N7Z5 1873 aa15.33■□□□□ 0.04
VPS4A-204ENST00000566354 NRXN2Q9P2S2 1712 aa15.33■□□□□ 0.04
VPS4A-204ENST00000566354 CCZ1BP86790 482 aa15.33■□□□□ 0.04
VPS4A-204ENST00000566354 CCZ1P86791 482 aaPredicted RBP15.33■□□□□ 0.04
VPS4A-204ENST00000566354 CHRNDQ07001 517 aa15.33■□□□□ 0.04
VPS4A-204ENST00000566354 SLC51AQ86UW1 340 aa15.33■□□□□ 0.04
VPS4A-204ENST00000566354 AOPEPQ8N6M6 819 aa15.33■□□□□ 0.04
VPS4A-204ENST00000566354 ZNF592Q92610 1267 aa15.33■□□□□ 0.04
VPS4A-204ENST00000566354 BSDC1Q9NW68 430 aaPredicted RBP15.33■□□□□ 0.04
VPS4A-204ENST00000566354 GOLGB1Q14789 3259 aaKnown RBP15.32■□□□□ 0.04
VPS4A-204ENST00000566354 DHX16O60231 1041 aaKnown RBP15.32■□□□□ 0.04
VPS4A-204ENST00000566354 ZRSR1Q15695 479 aaKnown RBP15.32■□□□□ 0.04
VPS4A-204ENST00000566354 CRY2Q49AN0 593 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 LINC00301Q8NCQ3 95 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 KCNG4Q8TDN1 519 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 BPIFA3Q9BQP9 254 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 OSBPL5Q9H0X9 879 aaPredicted RBP15.32■□□□□ 0.04
VPS4A-204ENST00000566354 PARP3Q9Y6F1 533 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 A0A0G2JLW4 131 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 WTIPA6NIX2 430 aaPredicted RBP15.32■□□□□ 0.04
VPS4A-204ENST00000566354 USP27XA6NNY8 438 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 KIF2AO00139 706 aaPredicted RBP15.32■□□□□ 0.04
VPS4A-204ENST00000566354 CHST3Q7LGC8 479 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 CCAR2Q8N163 923 aaKnown RBP15.32■□□□□ 0.04
VPS4A-204ENST00000566354 POLR3EQ9NVU0 708 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 KIAA1468Q9P260 1216 aa15.32■□□□□ 0.04
VPS4A-204ENST00000566354 A0A1B0GUL6 1792 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 YEATS4O95619 227 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 FGFR2P21802 821 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 STK38Q15208 465 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 PUM3Q15397 648 aaKnown RBP15.31■□□□□ 0.04
VPS4A-204ENST00000566354 SF3A1Q15459 793 aaKnown RBP15.31■□□□□ 0.04
VPS4A-204ENST00000566354 MINPP1Q9UNW1 487 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.31■□□□□ 0.04
VPS4A-204ENST00000566354 A0A1B0GVL5 298 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 DHX8Q14562 1220 aaKnown RBP15.31■□□□□ 0.04
VPS4A-204ENST00000566354 GORABQ5T7V8 394 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 BRAPQ7Z569 592 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 RPGRQ92834 1020 aaKnown RBP15.31■□□□□ 0.04
VPS4A-204ENST00000566354 C8orf76Q96K31 380 aa15.31■□□□□ 0.04
VPS4A-204ENST00000566354 A0A087WWV3 80 aa15.3■□□□□ 0.04
VPS4A-204ENST00000566354 M0R2C6 588 aa15.3■□□□□ 0.04
VPS4A-204ENST00000566354 PPFIA3O75145 1194 aa15.3■□□□□ 0.04
VPS4A-204ENST00000566354 CDK11BP21127 795 aaKnown RBP15.3■□□□□ 0.04
VPS4A-204ENST00000566354 NDUFA8P51970 172 aa15.3■□□□□ 0.04
VPS4A-204ENST00000566354 IMMTQ16891 758 aaKnown RBP15.3■□□□□ 0.04
VPS4A-204ENST00000566354 TTLL5Q6EMB2 1281 aa15.3■□□□□ 0.04
VPS4A-204ENST00000566354 FBXO18Q8NFZ0 1043 aa15.3■□□□□ 0.04
VPS4A-204ENST00000566354 KIF18AQ8NI77 898 aa15.3■□□□□ 0.04
VPS4A-204ENST00000566354 ZFYP08048 801 aaPredicted RBP15.29■□□□□ 0.04
VPS4A-204ENST00000566354 SLC20A2Q08357 652 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 GRAPQ13588 217 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 NBPF11Q86T75 865 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 GRAPLQ8TC17 118 aaPredicted RBP15.29■□□□□ 0.04
VPS4A-204ENST00000566354 LPIN2Q92539 896 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 ERCC4Q92889 916 aaPredicted RBP15.29■□□□□ 0.04
VPS4A-204ENST00000566354 UPF1Q92900 1129 aaKnown RBP eCLIP15.29■□□□□ 0.046e-11■■■■■ 39.7
VPS4A-204ENST00000566354 OSBP2Q969R2 916 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 DDX41Q9UJV9 622 aaKnown RBP15.29■□□□□ 0.04
VPS4A-204ENST00000566354 SPTLC2O15270 562 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 MMP14P50281 582 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 SCARF1Q14162 830 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 NAA30Q147X3 362 aaPredicted RBP15.29■□□□□ 0.04
VPS4A-204ENST00000566354 CCDC158Q5M9N0 1113 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 RGS22Q8NE09 1264 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 BRIP1Q9BX63 1249 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms