RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 LTBP2Q14767 1821 aa21.19■□□□□ 0.98
CLK3-217ENST00000566126 FOSL2P15408 326 aa21.18■□□□□ 0.98
CLK3-217ENST00000566126 GNAI1P63096 354 aa21.18■□□□□ 0.98
CLK3-217ENST00000566126 MAP3K21Q5TCX8 1036 aa21.18■□□□□ 0.98
CLK3-217ENST00000566126 TBC1D22AQ8WUA7 517 aa21.18■□□□□ 0.98
CLK3-217ENST00000566126 TRIB2Q92519 343 aa21.18■□□□□ 0.98
CLK3-217ENST00000566126 CNNM1Q9NRU3 951 aa21.18■□□□□ 0.98
CLK3-217ENST00000566126 TMEM265A0A087WTH1 108 aa21.17■□□□□ 0.98
CLK3-217ENST00000566126 PTPRAP18433 802 aa21.17■□□□□ 0.98
CLK3-217ENST00000566126 TCP10Q12799 353 aa21.17■□□□□ 0.98
CLK3-217ENST00000566126 FBXO33Q7Z6M2 555 aa21.17■□□□□ 0.98
CLK3-217ENST00000566126 LBHD1Q9BQE6 289 aaPredicted RBP21.17■□□□□ 0.98
CLK3-217ENST00000566126 MYH16Q9H6N6 1097 aa21.17■□□□□ 0.98
CLK3-217ENST00000566126 PHF20L1A8MW92 1017 aa21.16■□□□□ 0.98
CLK3-217ENST00000566126 HHIPL2Q6UWX4 724 aa21.16■□□□□ 0.98
CLK3-217ENST00000566126 SCYL3Q8IZE3 742 aa21.16■□□□□ 0.98
CLK3-217ENST00000566126 CHMP4AQ9BY43 222 aa21.16■□□□□ 0.98
CLK3-217ENST00000566126 NFIAQ12857 509 aa21.15■□□□□ 0.98
CLK3-217ENST00000566126 EPHA10Q5JZY3 1008 aa21.15■□□□□ 0.98
CLK3-217ENST00000566126 LMBR1LQ6UX01 489 aa21.15■□□□□ 0.98
CLK3-217ENST00000566126 USP38Q8NB14 1042 aa21.15■□□□□ 0.98
CLK3-217ENST00000566126 DOCK2Q92608 1830 aa21.15■□□□□ 0.98
CLK3-217ENST00000566126 ATRNL1Q5VV63 1379 aa21.14■□□□□ 0.98
CLK3-217ENST00000566126 PRKAR2AP13861 404 aaKnown RBP21.14■□□□□ 0.97
CLK3-217ENST00000566126 SHHQ15465 462 aa21.14■□□□□ 0.97
CLK3-217ENST00000566126 LINS1Q8NG48 757 aa21.14■□□□□ 0.97
CLK3-217ENST00000566126 AGTPBP1Q9UPW5 1226 aa21.14■□□□□ 0.97
CLK3-217ENST00000566126 NCOR1O75376 2440 aa21.14■□□□□ 0.97
CLK3-217ENST00000566126 DOCK1Q14185 1865 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 FRMPD3Q5JV73 1810 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 BDP1A6H8Y1 2624 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 MAP3K12Q12852 859 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 CCDC57Q2TAC2 916 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 TAF7LQ5H9L4 462 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 TREML2Q5T2D2 321 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 LHX8Q68G74 356 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 STK31Q9BXU1 1019 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 PICK1Q9NRD5 415 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 FAM198AQ9UFP1 575 aa21.13■□□□□ 0.97
CLK3-217ENST00000566126 MAST3O60307 1309 aa21.12■□□□□ 0.97
CLK3-217ENST00000566126 C9orf50Q5SZB4 431 aa21.12■□□□□ 0.97
CLK3-217ENST00000566126 CDC42EP5Q6NZY7 148 aa21.12■□□□□ 0.97
CLK3-217ENST00000566126 ZFPM1Q8IX07 1006 aa21.12■□□□□ 0.97
CLK3-217ENST00000566126 PUS3Q9BZE2 481 aaKnown RBP21.12■□□□□ 0.97
CLK3-217ENST00000566126 TRIM75PA6NK02 468 aa21.11■□□□□ 0.97
CLK3-217ENST00000566126 VPS37DQ86XT2 251 aa21.11■□□□□ 0.97
CLK3-217ENST00000566126 DNAAF4Q8WXU2 420 aa21.11■□□□□ 0.97
CLK3-217ENST00000566126 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.11■□□□□ 0.97
CLK3-217ENST00000566126 SUGT1Q9Y2Z0 365 aa21.11■□□□□ 0.97
CLK3-217ENST00000566126 FRAT2O75474 233 aaPredicted RBP21.1■□□□□ 0.97
CLK3-217ENST00000566126 CYP2B6P20813 491 aa21.1■□□□□ 0.97
CLK3-217ENST00000566126 SMAD3P84022 425 aaKnown RBP21.1■□□□□ 0.97
CLK3-217ENST00000566126 DAGLAQ9Y4D2 1042 aa21.1■□□□□ 0.97
CLK3-217ENST00000566126 LOC285556D6RIA3 1793 aa21.1■□□□□ 0.97
CLK3-217ENST00000566126 SLC4A2P04920 1241 aa21.09■□□□□ 0.97
CLK3-217ENST00000566126 CACNB2Q08289 660 aaPredicted RBP21.09■□□□□ 0.97
CLK3-217ENST00000566126 CCDC84Q86UT8 332 aaPredicted RBP21.09■□□□□ 0.97
CLK3-217ENST00000566126 PNMA3Q9UL41 463 aa21.09■□□□□ 0.97
CLK3-217ENST00000566126 ADAMTS8Q9UP79 889 aa21.09■□□□□ 0.97
CLK3-217ENST00000566126 SLURP2P0DP57 97 aa21.08■□□□□ 0.97
CLK3-217ENST00000566126 CCND3P30281 292 aaPredicted RBP21.08■□□□□ 0.97
CLK3-217ENST00000566126 FLIIQ13045 1269 aa21.08■□□□□ 0.97
CLK3-217ENST00000566126 GCLCP48506 637 aaPredicted RBP21.07■□□□□ 0.96
CLK3-217ENST00000566126 CALD1Q05682 793 aaKnown RBP21.07■□□□□ 0.96
CLK3-217ENST00000566126 MAP3K10Q02779 954 aa21.06■□□□□ 0.96
CLK3-217ENST00000566126 SENP6Q9GZR1 1112 aaPredicted RBP21.06■□□□□ 0.96
CLK3-217ENST00000566126 MYH13Q9UKX3 1938 aa21.06■□□□□ 0.96
CLK3-217ENST00000566126 XRCC5P13010 732 aaKnown RBP21.05■□□□□ 0.96
CLK3-217ENST00000566126 FKBP5Q13451 457 aaPredicted RBP21.05■□□□□ 0.96
CLK3-217ENST00000566126 DIXDC1Q155Q3 683 aa21.05■□□□□ 0.96
CLK3-217ENST00000566126 CAVIN4Q5BKX8 364 aa21.05■□□□□ 0.96
CLK3-217ENST00000566126 CTNND1O60716 968 aaKnown RBP21.04■□□□□ 0.96
CLK3-217ENST00000566126 ATN1P54259 1190 aaPredicted RBP21.04■□□□□ 0.96
CLK3-217ENST00000566126 WDR43Q15061 677 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLK3-217ENST00000566126 SH3BP5LQ7L8J4 393 aa21.04■□□□□ 0.96
CLK3-217ENST00000566126 PROCA1Q8NCQ7 364 aaPredicted RBP21.04■□□□□ 0.96
CLK3-217ENST00000566126 USP40Q9NVE5 1235 aa21.04■□□□□ 0.96
CLK3-217ENST00000566126 PRKAG2Q9UGJ0 569 aa21.04■□□□□ 0.96
CLK3-217ENST00000566126 MROH5Q6ZUA9 1318 aa21.04■□□□□ 0.96
CLK3-217ENST00000566126 SYNGAP1Q96PV0 1343 aa21.04■□□□□ 0.96
CLK3-217ENST00000566126 GRIN2CQ14957 1233 aa21.03■□□□□ 0.96
CLK3-217ENST00000566126 RALBP1Q15311 655 aa21.03■□□□□ 0.96
CLK3-217ENST00000566126 ASCC2Q9H1I8 757 aaPredicted RBP21.03■□□□□ 0.96
CLK3-217ENST00000566126 SPINK5Q9NQ38 1064 aaPredicted RBP21.03■□□□□ 0.96
CLK3-217ENST00000566126 MORF4L1Q9UBU8 362 aa21.03■□□□□ 0.96
CLK3-217ENST00000566126 LRRFIP2Q9Y608 721 aaKnown RBP21.03■□□□□ 0.96
CLK3-217ENST00000566126 RLFQ13129 1914 aa21.02■□□□□ 0.96
CLK3-217ENST00000566126 ZKSCAN1P17029 563 aaPredicted RBP21.02■□□□□ 0.96
CLK3-217ENST00000566126 RTP1P59025 263 aa21.02■□□□□ 0.96
CLK3-217ENST00000566126 CCL14Q16627 93 aa21.02■□□□□ 0.96
CLK3-217ENST00000566126 ADAMTS19Q8TE59 1207 aa21.02■□□□□ 0.96
CLK3-217ENST00000566126 TSR2Q969E8 191 aaKnown RBP21.02■□□□□ 0.96
CLK3-217ENST00000566126 NUDT12Q9BQG2 462 aa21.02■□□□□ 0.96
CLK3-217ENST00000566126 CACNA1FO60840 1977 aa21.01■□□□□ 0.95
CLK3-217ENST00000566126 APAF1O14727 1248 aa21.01■□□□□ 0.95
CLK3-217ENST00000566126 PEX10O60683 326 aa21.01■□□□□ 0.95
CLK3-217ENST00000566126 RGS3P49796 1198 aa21.01■□□□□ 0.95
CLK3-217ENST00000566126 BEND3Q5T5X7 828 aa21.01■□□□□ 0.95
CLK3-217ENST00000566126 TRMT44Q8IYL2 757 aaKnown RBP21.01■□□□□ 0.95
CLK3-217ENST00000566126 VGLL2Q8N8G2 317 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms