RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 OSBPL5Q9H0X9 879 aaPredicted RBP15.7■□□□□ 0.1
NEDD8-208ENST00000560427 DHX36Q9H2U1 1008 aaKnown RBP15.7■□□□□ 0.1
NEDD8-208ENST00000560427 DDX4Q9NQI0 724 aaKnown RBP15.7■□□□□ 0.1
NEDD8-208ENST00000560427 FLT1P17948 1338 aa15.69■□□□□ 0.1
NEDD8-208ENST00000560427 THSD7BQ9C0I4 1608 aa15.69■□□□□ 0.1
NEDD8-208ENST00000560427 MYH7P12883 1935 aa15.69■□□□□ 0.1
NEDD8-208ENST00000560427 RGMBQ6NW40 437 aa15.69■□□□□ 0.1
NEDD8-208ENST00000560427 CCDC102AQ96A19 550 aa15.69■□□□□ 0.1
NEDD8-208ENST00000560427 FSD1Q9BTV5 496 aa15.69■□□□□ 0.1
NEDD8-208ENST00000560427 CRNKL1Q9BZJ0 848 aaKnown RBP15.69■□□□□ 0.1
NEDD8-208ENST00000560427 MKRN1Q9UHC7 482 aaKnown RBP15.69■□□□□ 0.1
NEDD8-208ENST00000560427 ANGEL1Q9UNK9 670 aaKnown RBP15.69■□□□□ 0.1
NEDD8-208ENST00000560427 FOCADQ5VW36 1801 aa15.68■□□□□ 0.1
NEDD8-208ENST00000560427 RNF113AO15541 343 aaKnown RBP15.68■□□□□ 0.1
NEDD8-208ENST00000560427 DYNLL1P63167 89 aaKnown RBP15.68■□□□□ 0.1
NEDD8-208ENST00000560427 LDLRAD1Q5T700 205 aa15.68■□□□□ 0.1
NEDD8-208ENST00000560427 ZSCAN29Q8IWY8 852 aaPredicted RBP15.68■□□□□ 0.1
NEDD8-208ENST00000560427 CDAN1Q8IWY9 1227 aa15.68■□□□□ 0.1
NEDD8-208ENST00000560427 APPBP2Q92624 585 aa15.68■□□□□ 0.1
NEDD8-208ENST00000560427 CSRNP1Q96S65 589 aa15.68■□□□□ 0.1
NEDD8-208ENST00000560427 USP5P45974 858 aa15.67■□□□□ 0.1
NEDD8-208ENST00000560427 ANKRD13AQ8IZ07 590 aa15.67■□□□□ 0.1
NEDD8-208ENST00000560427 TGFBRAP1Q8WUH2 860 aa15.67■□□□□ 0.1
NEDD8-208ENST00000560427 AIDAQ96BJ3 306 aa15.67■□□□□ 0.1
NEDD8-208ENST00000560427 CCDC136Q96JN2 1154 aa15.67■□□□□ 0.1
NEDD8-208ENST00000560427 CAPNS2Q96L46 248 aa15.67■□□□□ 0.1
NEDD8-208ENST00000560427 ZNF341Q9BYN7 854 aa15.67■□□□□ 0.1
NEDD8-208ENST00000560427 UBE2Q2LH0YL09 131 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 TBC1D12O60347 775 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 USP2O75604 605 aaPredicted RBP15.66■□□□□ 0.1
NEDD8-208ENST00000560427 MBD4O95243 580 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 ZNF157P51786 506 aaPredicted RBP15.66■□□□□ 0.1
NEDD8-208ENST00000560427 MAP3K10Q02779 954 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 NOGQ13253 232 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 PAXIP1Q6ZW49 1069 aaPredicted RBP15.66■□□□□ 0.1
NEDD8-208ENST00000560427 SH3BP5LQ7L8J4 393 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 MAPKAPK5Q8IW41 473 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 ZFPM1Q8IX07 1006 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 LCORLQ8N3X6 602 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.66■□□□□ 0.13e-15■■□□□ 13.4
NEDD8-208ENST00000560427 HERC5Q9UII4 1024 aaKnown RBP15.66■□□□□ 0.1
NEDD8-208ENST00000560427 TAOK2Q9UL54 1235 aa15.66■□□□□ 0.1
NEDD8-208ENST00000560427 WDR33Q9C0J8 1336 aaKnown RBP15.66■□□□□ 0.1
NEDD8-208ENST00000560427 DDTLA6NHG4 134 aaPredicted RBP15.65■□□□□ 0.1
NEDD8-208ENST00000560427 HLA-DOAP06340 250 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 SLC10A3P09131 477 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 PDE4AP27815 886 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 VEGFBP49765 207 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 PRKG1Q13976 671 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 CYP4F22Q6NT55 531 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 MOB2Q70IA6 237 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 JMYQ8N9B5 988 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 DDRGK1Q96HY6 314 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 ATP8A2Q9NTI2 1148 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 PI4KBQ9UBF8 816 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 ZNF112Q9UJU3 913 aa15.65■□□□□ 0.1
NEDD8-208ENST00000560427 DDX60LQ5H9U9 1706 aaKnown RBP15.65■□□□□ 0.1
NEDD8-208ENST00000560427 TRIM6-TRIM34B2RNG4 842 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 GNAT2P19087 354 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 MAP2K2P36507 400 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 MAP3K9P80192 1104 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 RASAL3Q86YV0 1011 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 WRNIP1Q96S55 665 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 CDK5RAP2Q96SN8 1893 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 PUS7LQ9H0K6 701 aaKnown RBP15.64■□□□□ 0.09
NEDD8-208ENST00000560427 ARMT1Q9H993 441 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 CSADQ9Y600 493 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 OTOFQ9HC10 1997 aa15.64■□□□□ 0.09
NEDD8-208ENST00000560427 FAM155AB1AL88 458 aaPredicted RBP15.63■□□□□ 0.09
NEDD8-208ENST00000560427 ZMYM1Q5SVZ6 1142 aa15.63■□□□□ 0.09
NEDD8-208ENST00000560427 TTC22Q5TAA0 569 aa15.63■□□□□ 0.09
NEDD8-208ENST00000560427 TTC6Q86TZ1 520 aa15.63■□□□□ 0.09
NEDD8-208ENST00000560427 METTL16Q86W50 562 aaKnown RBP15.63■□□□□ 0.09
NEDD8-208ENST00000560427 FOXP4Q8IVH2 680 aaPredicted RBP15.63■□□□□ 0.09
NEDD8-208ENST00000560427 REM2Q8IYK8 340 aaPredicted RBP15.63■□□□□ 0.09
NEDD8-208ENST00000560427 OSBP2Q969R2 916 aa15.63■□□□□ 0.09
NEDD8-208ENST00000560427 EHD4Q9H223 541 aa15.63■□□□□ 0.09
NEDD8-208ENST00000560427 PPP4R2Q9NY27 417 aa15.63■□□□□ 0.09
NEDD8-208ENST00000560427 NAV1Q8NEY1 1877 aa15.63■□□□□ 0.09
NEDD8-208ENST00000560427 HIP1O00291 1037 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 CHGBP05060 677 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 ZBTB48P10074 688 aaPredicted RBP15.62■□□□□ 0.09
NEDD8-208ENST00000560427 VGLL4Q14135 290 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 SLFNL1Q499Z3 407 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 NOL9Q5SY16 702 aaKnown RBP15.62■□□□□ 0.09
NEDD8-208ENST00000560427 GIMAP6Q6P9H5 292 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.62■□□□□ 0.09
NEDD8-208ENST00000560427 MIGA2Q7L4E1 593 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 RILPL2Q969X0 211 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 SLC10A4Q96EP9 437 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 STRBPQ96SI9 672 aaKnown RBP15.62■□□□□ 0.09
NEDD8-208ENST00000560427 DCP1AQ9NPI6 582 aaPredicted RBP15.62■□□□□ 0.09
NEDD8-208ENST00000560427 HELLSQ9NRZ9 838 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 FZD1Q9UP38 647 aa15.62■□□□□ 0.09
NEDD8-208ENST00000560427 GPAA1O43292 621 aa15.61■□□□□ 0.09
NEDD8-208ENST00000560427 AMOTL1Q8IY63 956 aa15.61■□□□□ 0.09
NEDD8-208ENST00000560427 SDR42E1Q8WUS8 393 aa15.61■□□□□ 0.09
NEDD8-208ENST00000560427 TRIM34Q9BYJ4 488 aa15.61■□□□□ 0.09
NEDD8-208ENST00000560427 PALD1Q9ULE6 856 aa15.61■□□□□ 0.09
NEDD8-208ENST00000560427 SLC4A4Q9Y6R1 1079 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms