RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 PI16Q6UXB8 463 aa6.79□□□□□ -1.32
LRRC28-218ENST00000560236 PDZD3Q86UT5 571 aa6.79□□□□□ -1.32
LRRC28-218ENST00000560236 SULF2Q8IWU5 870 aa6.79□□□□□ -1.32
LRRC28-218ENST00000560236 CCER1Q8TC90 406 aaPredicted RBP6.79□□□□□ -1.32
LRRC28-218ENST00000560236 VAV3Q9UKW4 847 aa6.79□□□□□ -1.32
LRRC28-218ENST00000560236 CCDC180Q9P1Z9 1646 aa6.79□□□□□ -1.32
LRRC28-218ENST00000560236 IFI16Q16666 785 aaKnown RBP6.78□□□□□ -1.32
LRRC28-218ENST00000560236 DUSP23Q9BVJ7 150 aa6.78□□□□□ -1.32
LRRC28-218ENST00000560236 BCO2Q9BYV7 579 aa6.78□□□□□ -1.32
LRRC28-218ENST00000560236 RC3H2Q9HBD1 1191 aaKnown RBP6.78□□□□□ -1.32
LRRC28-218ENST00000560236 MKNK2Q9HBH9 465 aa6.78□□□□□ -1.32
LRRC28-218ENST00000560236 AKAP2Q9Y2D5 859 aa6.78□□□□□ -1.32
LRRC28-218ENST00000560236 U3KQE9 123 aa6.78□□□□□ -1.32
LRRC28-218ENST00000560236 NEFMP07197 916 aa6.77□□□□□ -1.33
LRRC28-218ENST00000560236 ARNTP27540 789 aa6.77□□□□□ -1.33
LRRC28-218ENST00000560236 AOC3Q16853 763 aa6.77□□□□□ -1.33
LRRC28-218ENST00000560236 MAP1SQ66K74 1059 aaPredicted RBP6.77□□□□□ -1.33
LRRC28-218ENST00000560236 ATG4DQ86TL0 474 aaPredicted RBP6.77□□□□□ -1.33
LRRC28-218ENST00000560236 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.77□□□□□ -1.33
LRRC28-218ENST00000560236 ISL2Q96A47 359 aa6.77□□□□□ -1.33
LRRC28-218ENST00000560236 MBNL3Q9NUK0 354 aaKnown RBP6.77□□□□□ -1.33
LRRC28-218ENST00000560236 TMEM265A0A087WTH1 108 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 CEACAM5P06731 702 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 RNASE1P07998 156 aaKnown RBP6.76□□□□□ -1.33
LRRC28-218ENST00000560236 CD96P40200 585 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 OXCT1P55809 520 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 PDE4CQ08493 712 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 ZC3H12AQ5D1E8 599 aaKnown RBP6.76□□□□□ -1.33
LRRC28-218ENST00000560236 TMC7Q7Z402 723 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 TOP6BLQ8N6T0 577 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 PI4K2BQ8TCG2 481 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 STK35Q8TDR2 534 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 HRASLS5Q96KN8 279 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 EMILIN2Q9BXX0 1053 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 CARMIL2Q6F5E8 1435 aa6.76□□□□□ -1.33
LRRC28-218ENST00000560236 NME2P22392 152 aa6.75□□□□□ -1.33
LRRC28-218ENST00000560236 ERVK-24P63145 666 aa6.75□□□□□ -1.33
LRRC28-218ENST00000560236 ZNF648Q5T619 568 aaPredicted RBP6.75□□□□□ -1.33
LRRC28-218ENST00000560236 NXPE4Q6UWF7 544 aa6.75□□□□□ -1.33
LRRC28-218ENST00000560236 RETREG2Q8NC44 543 aa6.75□□□□□ -1.33
LRRC28-218ENST00000560236 RNF214Q8ND24 703 aa6.75□□□□□ -1.33
LRRC28-218ENST00000560236 ACSBG1Q96GR2 724 aa6.75□□□□□ -1.33
LRRC28-218ENST00000560236 CBX8Q9HC52 389 aa6.75□□□□□ -1.33
LRRC28-218ENST00000560236 BIN2Q9UBW5 565 aaPredicted RBP6.75□□□□□ -1.33
LRRC28-218ENST00000560236 ADAMTS6Q9UKP5 1117 aa6.75□□□□□ -1.33
LRRC28-218ENST00000560236 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.75□□□□□ -1.33
LRRC28-218ENST00000560236 SOWAHDA6NJG2 315 aa6.74□□□□□ -1.33
LRRC28-218ENST00000560236 ITIH2P19823 946 aa6.74□□□□□ -1.33
LRRC28-218ENST00000560236 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.74□□□□□ -1.33
LRRC28-218ENST00000560236 ANGEL2Q5VTE6 544 aaKnown RBP6.74□□□□□ -1.33
LRRC28-218ENST00000560236 GPBAR1Q8TDU6 330 aa6.74□□□□□ -1.33
LRRC28-218ENST00000560236 FAM168AQ92567 244 aa6.74□□□□□ -1.33
LRRC28-218ENST00000560236 ARID3AQ99856 593 aa6.74□□□□□ -1.33
LRRC28-218ENST00000560236 PLAGL2Q9UPG8 496 aa6.74□□□□□ -1.33
LRRC28-218ENST00000560236 ZNF252P-AS1Q0IIN9 211 aa6.73□□□□□ -1.33
LRRC28-218ENST00000560236 LRRN4CLQ8ND94 238 aa6.73□□□□□ -1.33
LRRC28-218ENST00000560236 DCTN4Q9UJW0 460 aa6.73□□□□□ -1.33
LRRC28-218ENST00000560236 PNMA6FA0A0J9YX94 578 aa6.72□□□□□ -1.33
LRRC28-218ENST00000560236 PLCB3Q01970 1234 aa6.72□□□□□ -1.33
LRRC28-218ENST00000560236 HEXIM2Q96MH2 286 aaKnown RBP6.72□□□□□ -1.33
LRRC28-218ENST00000560236 PICK1Q9NRD5 415 aa6.72□□□□□ -1.33
LRRC28-218ENST00000560236 GTF2IRD1Q9UHL9 959 aa6.72□□□□□ -1.33
LRRC28-218ENST00000560236 FARP2O94887 1054 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-218ENST00000560236 DSC3Q14574 896 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 ENOX2Q16206 610 aaKnown RBP6.71□□□□□ -1.34
LRRC28-218ENST00000560236 LCE1DQ5T752 114 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 SLC23A3Q6PIS1 610 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 TMEM40Q8WWA1 233 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 NECAB3Q96P71 396 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-218ENST00000560236 TNKS2Q9H2K2 1166 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 PRDM10Q9NQV6 1147 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 SAMM50Q9Y512 469 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 SNX11Q9Y5W9 270 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 CSADQ9Y600 493 aa6.71□□□□□ -1.34
LRRC28-218ENST00000560236 ZNF124Q15973 351 aa6.7□□□□□ -1.34
LRRC28-218ENST00000560236 PPM1JQ5JR12 505 aa6.7□□□□□ -1.34
LRRC28-218ENST00000560236 MPRIPQ6WCQ1 1025 aa6.7□□□□□ -1.34
LRRC28-218ENST00000560236 TPTE2Q6XPS3 522 aa6.7□□□□□ -1.34
LRRC28-218ENST00000560236 C3orf58Q8NDZ4 430 aa6.7□□□□□ -1.34
LRRC28-218ENST00000560236 GRIN3AQ8TCU5 1115 aa6.7□□□□□ -1.34
LRRC28-218ENST00000560236 CEP44Q9C0F1 390 aa6.7□□□□□ -1.34
LRRC28-218ENST00000560236 CACNA2D2Q9NY47 1150 aa6.7□□□□□ -1.34
LRRC28-218ENST00000560236 DCDC2CA8MYV0 355 aa6.69□□□□□ -1.34
LRRC28-218ENST00000560236 IGF2BP3O00425 579 aaKnown RBP eCLIP6.69□□□□□ -1.34
LRRC28-218ENST00000560236 TREHO43280 583 aa6.69□□□□□ -1.34
LRRC28-218ENST00000560236 MAPK1P28482 360 aa6.69□□□□□ -1.34
LRRC28-218ENST00000560236 GSTT1P30711 240 aa6.69□□□□□ -1.34
LRRC28-218ENST00000560236 IKZF1Q13422 519 aa6.69□□□□□ -1.34
LRRC28-218ENST00000560236 PKN1Q16512 942 aa6.69□□□□□ -1.34
LRRC28-218ENST00000560236 FAM214BQ7L5A3 538 aa6.69□□□□□ -1.34
LRRC28-218ENST00000560236 ASB11Q8WXH4 323 aa6.69□□□□□ -1.34
LRRC28-218ENST00000560236 ENC1O14682 589 aa6.68□□□□□ -1.34
LRRC28-218ENST00000560236 TRIM37O94972 964 aa6.68□□□□□ -1.34
LRRC28-218ENST00000560236 BMP6P22004 513 aa6.68□□□□□ -1.34
LRRC28-218ENST00000560236 NTF4P34130 210 aa6.68□□□□□ -1.34
LRRC28-218ENST00000560236 CDC37L1Q7L3B6 337 aa6.68□□□□□ -1.34
LRRC28-218ENST00000560236 C12orf40Q86WS4 652 aa6.68□□□□□ -1.34
LRRC28-218ENST00000560236 KSR1Q8IVT5 923 aa6.68□□□□□ -1.34
LRRC28-218ENST00000560236 PRDM7Q9NQW5 492 aa6.68□□□□□ -1.34
LRRC28-218ENST00000560236 DBX1A6NMT0 343 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms